Query= MSMg01no512_p09.b1 MSMg01no512_p09.b1 CHROMAT_FILE:
MSMg01no512_p09.b1 PHD_FILE: MSMg01no512_p09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:18 2005
(599 letters)
>mm_chr3_41099427_41100426
Length = 1000
Score = 1052 bits (544), Expect = 0.0
Identities = 583/596 (97%), Gaps = 1/596 (0%)
Strand = Plus / Plus
Query: 5 gaattctcttttagacagagaggtggatagtatcgcctgcaagtggtatgaagctacagt 64
|||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 205 gaattctcttggagacagagaggtggatagtattgcctgcaagtgacatgaagctacagt 264
Query: 65 ctaccatggtggctgcaccgatgggttaaagagctatagagagcaaggttgtttcctctg 124
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctaccatggcggctgcaccgatgggttaaagagctatagagagcaaggttgtttcctctg 324
Query: 125 ggctggctaaaggctccccgagttgtactccttcataatcctttggctcttgtttttgcc 184
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 325 ggccggctaaaggctccccgagttgtactccttcataatcctttggctcttgtctttgcc 384
Query: 185 tataaaccatcaatgacttacggtagaggctaagtcactaggctgagtttttattctatg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tataaaccatcaatgacttacggtagaggctaagtcactaggctgagtttttattctatg 444
Query: 245 ggtccgaaatgtctgca-aatggcacatggtctccttcacctattcgctcactctctcgt 303
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggtccgaaatgtctgcagaatggcacatggtctccttcacctattcgctcactctctcgt 504
Query: 304 ttactcggcaaccatctgcagcatgaattctatgtgccaggagttgtaactgcccttgag 363
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttactcagcaaccatctgcagcatgaattctatgtgccaggagttgtaactgcccttgag 564
Query: 364 gctccctccttggcttttgagaagctcccagtctggtgcggatggtcagctcctacagcc 423
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 565 gctccctccttggcttttgagaagctcccagtctggtgtggatggtcagctcctacagcc 624
Query: 424 agtgccacactgtatctcagagccgtgggagtctgtggcagagcacagctgctgggggtc 483
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agtgccacactgcatctcagagccgtgggagtctgtggcagagcacagctgctgggggtc 684
Query: 484 acttccttgacgggacactttttttgagcttaatggagggacagtgggagttagctaggt 543
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acttccttgactggacactttttttgagcttaatggagggacagtgggagttagctaggt 744
Query: 544 cgggaggggagtaggagtttggggtcaggagtctggaatagcatagcctatgcagg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cgggaggggagtaggagtttggggtcaggagtctggaatagcatagcctatgcagg 800
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 1000
Length adjustment: 10
Effective length of query: 589
Effective length of database: 990
Effective search space: 583110
Effective search space used: 583110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_p09.g1 MSMg01no512_p09.g1 CHROMAT_FILE:
MSMg01no512_p09.g1 PHD_FILE: MSMg01no512_p09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:18 2005
(666 letters)
>mm_chr3_41282522_41283588
Length = 1067
Score = 1110 bits (574), Expect = 0.0
Identities = 638/668 (95%), Gaps = 18/668 (2%)
Strand = Plus / Minus
Query: 1 aaggccagccaggtctacacagtgagttccagaatagccagggctacaccaagaaaccct 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 864 aaggccagccaggtctacacagtgagttccacaatagccagggctacaccaagaaaccct 805
Query: 61 gtcttgaaaaatgaaaacaaaacaaaacaaaacaaattttgacagaatatcagcaaaata 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 804 gtcttgaaaaatgaaaacaaaacaaaacaaaacacattttgacagaatatcagcaaaata 745
Query: 121 acataacatctaagacatcccagtaaggatgaggaaggagaaacaggaataaaggggaag 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 744 acataacatctaagacatcccagtaaggatgagggaggagaaacaggaataaaggggaag 685
Query: 181 agaggacagtgtcttgggtagtgctaagtgacaggcctagagtcacctgagaggtaggag 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 684 agaggacagtgtcttgggtagtgctaagtgacaggcctagagtcacctgagaggca---- 629
Query: 241 tggatccattcacttccacct-gaccatcctagataaaagacaggctcaagacaagcagc 299
|| |||| ||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 628 --ga-ccat---------cctagaccatcctagataaaagacaggctcaagacaagaagc 581
Query: 300 catgatgccaaccacacggaccagagcaatcgcaagaaggaacagatgccttctagatca 359
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 cttgatgccaaccacacggaccagagcaatcgcaagaaggaacagatgccttctagatca 521
Query: 360 aaatattctaagtgtgtgtgtggtggtggt-ggggttctcaacctgtaggtccaaccaat 418
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 520 aaatattctaagtgtgtgtgtggtggtggtgggggttctcaacctgtaggtccaaccaaa 461
Query: 419 tatttacattatgattcataacagtagcaaagctacagttacaaggtagtaatgcaaata 478
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 460 tatttacattatgattcataacaatagcaaagctacagttacaaggtagtaatgcaaata 401
Query: 479 gttttatgcttctggcatcaccacaacatgaggagctgtactagaagggtctcaacattc 538
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 400 gttttatgcttctggcatcaccacaacatgaggagctgtactggaagggtctcaacatcc 341
Query: 539 cataggttgcaaaccaatgtagcaaacatgtagaagatgctgggaataagcataggtgtg 598
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 340 cataggttgcaaaccaatgtagcaaacatgtagaagatgctgggaaaaagcataggtgtg 281
Query: 599 gtaggtaaaaggtaggccttgtggatcctcagatctacatgcatacaatcttcctttgct 658
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 280 gtaggtaaaaggtaggccttgtggatcctcagatctacatgcagacaatcttcctttgct 221
Query: 659 ctgagaaa 666
||||||||
Sbjct: 220 ctgagaaa 213
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1067
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1057
Effective search space: 693392
Effective search space used: 693392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
