Query= MSMg01no513_h15.b1 MSMg01no513_h15.b1 CHROMAT_FILE:
MSMg01no513_h15.b1 PHD_FILE: MSMg01no513_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:59 2005
(625 letters)
>mm_chr3_139595894_139596919
Length = 1026
Score = 1174 bits (607), Expect = 0.0
Identities = 619/623 (99%), Gaps = 1/623 (0%)
Strand = Plus / Plus
Query: 4 ggaattctctgctgtgtcctcaacactccagcctttta-aaactgcagtcaggaaggacc 62
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 204 ggaattctctgctgtgtcctcaacactccagccttttacaaactgcagtcagaaaggacc 263
Query: 63 ttctggtgactcatgggcaccagcagacagaatgcatctcctgctgggttgtcagatgga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttctggtgactcatgggcaccagcagacagaatgcatctcctgctgggttgtcagatgga 323
Query: 123 tggaattagtgccagaccagttgcagcccagatgcctgctttagttctccctcttctgca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tggaattagtgccagaccagttgcagcccagatgcctgctttagttctccctcttctgca 383
Query: 183 cctctccattgtgcaattcacactacggctgcttgctttatcgggacggcagagcagaga 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 384 cctctccattgtgcaattcacactacggctgcttgctttatcgggacggcagagaagaga 443
Query: 243 atataaaggttaacgtgatggaaactgaactctttcctcactaagggtgggtatggaatt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atataaaggttaacgtgatggaaactgaactctttcctcactaagggtgggtatggaatt 503
Query: 303 ctattactttgcctgtattgtattcatcaatgggtgggtgcattcgttttacacttaaag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctattactttgcctgtattgtattcatcaatgggtgggtgcattcgttttacacttaaag 563
Query: 363 gaaggatattacacagcaccatagattctgagttaggggtcctttaaagacatttcatga 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaaggatattacacagcaccatagattctgagttaggggtcctttaaagacatttcatga 623
Query: 423 aaagcttaacctaaagtatttatgagattcaggagaggctcaaagtagataccagtgcat 482
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 624 aaagcttaacctaaagtatttatgagattcaggagaggctcaaattagataccagtgcat 683
Query: 483 ctgtaggggcacagcagggactaaaacaaagccaagagtatcaaaactaaggactgaaca 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctgtaggggcacagcagggactaaaacaaagccaagagtatcaaaactaaggactgaaca 743
Query: 543 catcatagtgctcatgaagtggttttactttgtggattcttctataatgcaagagatatg 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 catcatagtgctcatgaagtggttttactttgtggattcttctataatgcaagagatatg 803
Query: 603 cttaatcaatagagaggcagatc 625
|||||||||||||||||||||||
Sbjct: 804 cttaatcaatagagaggcagatc 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1026
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1016
Effective search space: 624840
Effective search space used: 624840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_h15.g1 MSMg01no513_h15.g1 CHROMAT_FILE:
MSMg01no513_h15.g1 PHD_FILE: MSMg01no513_h15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:59 2005
(647 letters)
>mm_chr3_139644673_139645722
Length = 1050
Score = 1094 bits (566), Expect = 0.0
Identities = 610/626 (97%), Gaps = 3/626 (0%)
Strand = Plus / Minus
Query: 1 tccttatttcagcgtcacagctgctaattcatgaaaaactctacaagacaaattaaagac 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 633 tccttatttcagcgtcacagctgctaattcatgaaaaactctacaaaacaaattaaagac 574
Query: 61 tcatgtgaacaaacactgcgtctttggtttaaaccaagattaactgaaatttgaaaaaga 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tcatgtgcacaaacactgcgtctttggtttaaaccaagattaactgaaatttgaaaaaga 514
Query: 121 agacatgaaatcagttcagttggacttgagcaaagc---ttttttttttctttactttac 177
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 513 agacatgaaatcagttcagttggacttgagcaaagctttttttttttttctttactttac 454
Query: 178 ccaaggccaactaaacattggtattaagactgtaaacaaaaactgtgtttttgtgcccca 237
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 453 ccaaggccaactaaacattggtattaagactggaaacaaaaactgtgtttttgttcccca 394
Query: 238 aattccactcacttctttactatttaatttcaacttttaaaaatcatattctaaaatgtg 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aattccactcacttctttactatttaatttcaacttttaaaaatcatattctaaaatgtg 334
Query: 298 attcagatttatattttccttctgtgtatttaatcatatgactccttaggataaaaattt 357
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 333 attcagatttatattttccttctgtatatttaatcatatgactccttaggataaaatttt 274
Query: 358 ctgaaaaagtttatattgtgctttatatttaaggtataatttgcaaagtaatttatacct 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ctgaaaaagtttatattgtgctttatatttaaggtataatttgcaaagtaatttatacct 214
Query: 418 gtttatcctggctccctcgccgtacctgtctgcttcttgccacaatgactatggacgaat 477
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 213 gtttatcctggctttctcgccgtacctgtctgcttcttatcacaatgactatggacgaat 154
Query: 478 cctctgaaatggcaagcaaacatttgattacatggtgttctttgatgagatttgccttca 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 cctctgaaatggcaagcaaacatttgattacatggtgttctttgatgagatttgccttca 94
Query: 538 ttatggtaactcttcactgtaagagaagagtaactaggagagtcttgtcctgtccctctc 597
|||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 93 ttatggtatctcttcactgtaagacaagagtaactaggacagtcttgtcctgtccctctc 34
Query: 598 acccctcctcctcttctccctcttcc 623
||||||||||||||||||||||||||
Sbjct: 33 acccctcctcctcttctccctcttcc 8
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1050
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1040
Effective search space: 662480
Effective search space used: 662480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
