BAC Information

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BAC

Clone NameMSMg01-514A14
Chromosome3 (Build37)
Map Location 52,758,355 - 52,953,938
singlet/doubletdoublet
Overlap geneCog6, Lhfp, LOC100039808
Upstream geneLOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1, LOC100039762, LOC100039832
Downstream geneLOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155, Ufm1, EG666444, LOC100039937
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514A14.T7 (MSMg01no514_a14.b1)MSMg01-514A14.TJ (MSMg01no514_a14.g1)
ACCAG586616AG586617
length757766
length of high quality
(start - end)		697 (40 - 736)552 (70 - 621)
definitionCHROMAT_FILE: MSMg01no514_a14.b1 PHD_FILE: MSMg01no514_a14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:46 2005CHROMAT_FILE: MSMg01no514_a14.g1 PHD_FILE: MSMg01no514_a14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,953,268 - 52,953,938)(52,758,355 - 52,758,906)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TTTTGAATCTCAGTACTCCTTACATTTTGCATTGAGCTTATTAAAAATAG
AGCCCAACGTTGCTTTTTGAGAGACTCATATATACCCTAGTTCAGATGTG
ACCCAGAAATCTGGGCTTCCAATGTGCTTTCCATCTGATCTCTTTCCAAA
TGGCCCCAGGATTCTGCTCAGAGAGCTACACAGCAGATGGGATGGGTAGT
CAGGGTGGGGGTAACATATCAGGCAGAAAAAGCCATCTGGGAGAGAAGTA
GGCCATACAGGAATGGAATGTATGGGAAGCTGCAGTGAAAAAGTCCATAG
TCTGAGTGGGGCCTGATCATGACTTCTTACTTACCACATGCAGGAGCTTA
AATATGACCCTAAGCAATGTAATGGCGTAATGTGAACGAGAAATGAGATT
GCATGTACCTAATAACCTCTTAACACTTATTTTAGCTGATTCACAAATAC
GTGAAGATTGAGCCAGGCATGATGGCATATGCCTATAATCCCAGCATTCA
GGGGGCAGTTGGACCACAGTTTTCAGGCCAGCCTAGACTACCTAGAAAAA
TAGCAGGATTCTATCTCAAAACAAAACAAAATGAAAAAACAATAATAATT
AAAAAAAAACCCAAGCAATCAGTATTCAACCAGAAAACAAATAGAAAACC
AACCACCATGAAATTGTACATATCACAGGGCCCCATATGGTGGATTGATA
TAGGTAN

AAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCACGGGAAGCTTACCTACGGACTGCCAATCC
CATCTTTAAATGAATATATGCCCATGGATGAATAACCTTAAGTAAATATA
TTTTAAAATCTAAAGGGGGGAACTAAGTCAGGCATTTGCTATAAATCTTA
CTATGTGTCTTAATACCTCTGTGTCCTAAAGCAAAATTGCTGGGAGGTTT
CTCTTCTGTAAAATGGGCTAACCCTTATAAGCTTGTTGTGAGAATGACTG
CACGCGTAGATGCACACCACTTGATAAAGAATCCAGTTAAACACTAAAGC
ATTTGGTTAAATGATCTGCTAGCGTCAGTTCCTCCCACATCTGCCAATCC
AATTAACCGCATCCTCTTGGCAGAGAGAGGGAGAGTACTGTGCTGAGATC
AACCTGACCACCTTGCCTGGAAGGAGGCCCGTGTGCAGTAATCACCCACA
CACTTTTGCTCGCTCCGCTCCCTTCACCTTTGACCCAGTCTACTCACTCC
GGTTCACAGAGTGGTGAGCCAATATCACAAAGAAAAGGGACATTTCCTAC
CTTTGAAAAGAATGGGCAGAGACCCAGCAGACTTGTGGTGCCTGCCATTT
CCCATCTGTAAATTTCTCAAAATACTTTCCAGTAAACGATCTGTTGGGGT
TCGCGCATCATGATGAATAACGNTAAATGTCGCAGTCATTGTGTGCCTTC
TAAATANATGGTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_a14.b1 MSMg01no514_a14.b1 CHROMAT_FILE:
MSMg01no514_a14.b1 PHD_FILE: MSMg01no514_a14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:46 2005
         (697 letters)



>mm_chr3_52953268_52954364
          Length = 1097

 Score = 1266 bits (655), Expect = 0.0
 Identities = 667/671 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcattttgaatctcagtactccttacattttgcattgagcttattaaaaatagag 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ggaattcattttgaagctcagtactccttacattttgcattgagcttattaaaaatagag 612

                                                                       
Query: 64  cccaacgttgctttttgagagactcatatataccctagttcagatgtgacccagaaatct 123
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 611 cccaacgttgctttttgagagactcatatataccctagctcagatgtgacccagaaatct 552

                                                                       
Query: 124 gggcttccaatgtgctttccatctgatctctttccaaatggccccaggattctgctcaga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gggcttccaatgtgctttccatctgatctctttccaaatggccccaggattctgctcaga 492

                                                                       
Query: 184 gagctacacagcagatgggatgggtagtcagggtgggggtaacatatcaggcagaaaaag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gagctacacagcagatgggatgggtagtcagggtgggggtaacatatcaggcagaaaaag 432

                                                                       
Query: 244 ccatctgggagagaagtaggccatacaggaatggaatgtatgggaagctgcagtgaaaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ccatctgggagagaagtaggccatacaggaatggaatgtatgggaagctgcagtgaaaaa 372

                                                                       
Query: 304 gtccatagtctgagtggggcctgatcatgacttcttacttaccacatgcaggagcttaaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gtccatagtctgagtggggcctgatcatgacttcttacttaccacatgcaggagcttaaa 312

                                                                       
Query: 364 tatgaccctaagcaatgtaatggcgtaatgtgaacgagaaatgagattgcatgtacctaa 423
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 311 tatgaccctaagcaatgtaatggcgtaatgtgaatgagaaatgagattgcatgtacctaa 252

                                                                       
Query: 424 taacctcttaacacttattttagctgattcacaaatacgtgaagattgagccaggcatga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 taacctcttaacacttattttagctgattcacaaatacgtgaagattgagccaggcatga 192

                                                                       
Query: 484 tggcatatgcctataatcccagcattcagggggcagttggaccacagttttcaggccagc 543
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 191 tggcatatgcctataatcccagcattcagggggcaggtggaccacagttttcaggccagc 132

                                                                       
Query: 544 ctagactacctagaaaaatagcaggattctatctcaaaacaaaacaaaatgaaaaaacaa 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ctagactacctagaaaaatagcaggattctatctcaaaacaaaacaaaatgaaaaaacaa 72

                                                                       
Query: 604 taataattaaaaaaaaacccaagcaatcagtattcaaccagaaaacaaatagaaaaccaa 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  taataattaaaaaaaaacccaagcaatcagtattcaaccagaaaacaaatagaaaaccaa 12

                      
Query: 664 ccaccatgaaa 674
           |||||||||||
Sbjct: 11  ccaccatgaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space:   746769
Effective search space used:   746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no514_a14.g1 MSMg01no514_a14.g1 CHROMAT_FILE:
MSMg01no514_a14.g1 PHD_FILE: MSMg01no514_a14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:46 2005
         (552 letters)



>mm_chr3_52758155_52759106
          Length = 952

 Score = 1060 bits (548), Expect = 0.0
 Identities = 551/552 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacgggaagcttacctacggactgccaatcccatctttaaatgaatatatgcccatggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacgggaagcttacctacggactgccaatcccatctttaaatgaatatatgcccatggat 260

                                                                       
Query: 61  gaataaccttaagtaaatatattttaaaatctaaaggggggaactaagtcaggcatttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaataaccttaagtaaatatattttaaaatctaaaggggggaactaagtcaggcatttgc 320

                                                                       
Query: 121 tataaatcttactatgtgtcttaatacctctgtgtcctaaagcaaaattgctgggaggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tataaatcttactatgtgtcttaatacctctgtgtcctaaagcaaaattgctgggaggtt 380

                                                                       
Query: 181 tctcttctgtaaaatgggctaacccttataagcttgttgtgagaatgactgcacgcgtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctcttctgtaaaatgggctaacccttataagcttgttgtgagaatgactgcacgcgtag 440

                                                                       
Query: 241 atgcacaccacttgataaagaatccagttaaacactaaagcatttggttaaatgatctgc 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgcacaccacttgatagagaatccagttaaacactaaagcatttggttaaatgatctgc 500

                                                                       
Query: 301 tagcgtcagttcctcccacatctgccaatccaattaaccgcatcctcttggcagagagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagcgtcagttcctcccacatctgccaatccaattaaccgcatcctcttggcagagagag 560

                                                                       
Query: 361 ggagagtactgtgctgagatcaacctgaccaccttgcctggaaggaggcccgtgtgcagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggagagtactgtgctgagatcaacctgaccaccttgcctggaaggaggcccgtgtgcagt 620

                                                                       
Query: 421 aatcacccacacacttttgctcgctccgctcccttcacctttgacccagtctactcactc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatcacccacacacttttgctcgctccgctcccttcacctttgacccagtctactcactc 680

                                                                       
Query: 481 cggttcacagagtggtgagccaatatcacaaagaaaagggacatttcctacctttgaaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cggttcacagagtggtgagccaatatcacaaagaaaagggacatttcctacctttgaaaa 740

                       
Query: 541 gaatgggcagag 552
           ||||||||||||
Sbjct: 741 gaatgggcagag 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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