Query= MSMg01no515_a06.b1 MSMg01no515_a06.b1 CHROMAT_FILE:
MSMg01no515_a06.b1 PHD_FILE: MSMg01no515_a06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:08 2005
(594 letters)
>mm_chr3_5479234_5480227
Length = 994
Score = 741 bits (383), Expect = 0.0
Identities = 425/439 (96%), Gaps = 2/439 (0%)
Strand = Plus / Minus
Query: 157 agcctctcagagaaaagccatgctaggctcctgctgacaagcacaacatgacatcagaaa 216
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 994 agcctctcagagaaaagccatgctaggctcctgctggcaagcacaacatgacatcagaaa 935
Query: 217 cagtgccagggtttggtgcctgagcatcagatggatctctagatggcctttcctccagac 276
||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||
Sbjct: 934 cagtgccagggtttggtgcctgagcatgggatggatctctagatgccctttccttcagac 875
Query: 277 tctgcgtcatttttgttcctacatttccattaggcaggaacaattctggtcaaaactttt 336
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 tctgcaacttttttgttcctacatttccattaggcaggaacaattctggtcaaaactttt 815
Query: 337 gtagttaggtggccccatcctatcatggtgttttatttcaattacagaaagcaaactaag 396
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 814 gtagttaggtggccccatcctatcatggtgttttatttcaattacagaaagctaactaag 755
Query: 397 atattccatttgcatgtgaagtatatgtgcccatgtatatacctgtttgtgtaagtaagg 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 atattccatttgcatgtgaagtatatgtgcccatgtatatacctgtttgtgtaagtaagg 695
Query: 457 gcccacgtatgtgcatggatgctcttcagtgttcattcatgtgtgtctatgacactacag 516
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 694 gcccacgtatgtgcatggatgcccttcagtgttcattcatttgtgtctatgacactacag 635
Query: 517 tgtacttattgagtaattgaacctaggctcttcaaaattgctccttttg-atgcccagct 575
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 634 cgtacttattgagtaattgaacctaggctcttcaaaattgctcc-tttgaatgcccagct 576
Query: 576 gctgtaggaattccatctc 594
|||||||||||||||||||
Sbjct: 575 gctgtaggaattccatctc 557
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no515_a06.g1 MSMg01no515_a06.g1 CHROMAT_FILE:
MSMg01no515_a06.g1 PHD_FILE: MSMg01no515_a06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:08 2005
(231 letters)
>mm_chr3_5311270_5311901
Length = 632
Score = 366 bits (189), Expect = e-106
Identities = 221/232 (95%), Gaps = 1/232 (0%)
Strand = Plus / Plus
Query: 1 gttacaagaaatactaactataaatatttatatgactacctacaatgtatgcctcattac 60
|||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||
Sbjct: 201 gttacaagaaatactaaccataaatatttatataactacctaaaatgtatgcctcattac 260
Query: 61 acttaattctgttaattattgttcatgttgcagtatctagtgtaaatgtggncatagagc 120
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 261 acttaattctgttaattattgttcatgttgcagtatctagtgtaaacgtggccatagagc 320
Query: 121 aatacacagtttaccattatatcattgcagatggatcctattaacttcacatgcttaaag 180
||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 aatgcacagtttagcattatatcattgcagatggatcctattaacttcacttgcttaaag 380
Query: 181 tacataagataaacataaa-tattcatgggtccacaatttttttcatttatt 231
||||||| ||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 381 tacataaaataaacataaaatattcatgggtccataatttttttcatttatt 432
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 632
Length adjustment: 9
Effective length of query: 222
Effective length of database: 623
Effective search space: 138306
Effective search space used: 138306
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
