TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGAGGATCCGCGGAATT
CTCATCAGAGACTATGAAAGCCTGGACAGACCCTAAGAGAACACAAAGGC
CAACCCAGGCTAATATACCCAGCAAAATTCTCAATTACCATAGATGGAAA
AACCAAGGTATTCCATGACAAATGCAAATTCACACAATATCTTTCCATTA
ATCCAGCCCATCAAAGGATAATAAAGGGAAAACCCCAACACAATGACAGA
AATTACATCCTAGAAAAAGCAAGATAGTAATCCTTCAACAACCTAAAAGA
AGACAGCCACAGAAACAGAATCCCAATTCTAAAAACAAAAATAACAGGAA
GCAATAATTACTTTTCCTTAATATCTCTTAATATCAATAGACTCAATTCC
CCAATAAAATGACACAGAGTAACAGAATAGTTACATAAACAGGACAAACA
TTTTGCTGCATACAGGAAACCCACTACAGGGACAAAGACAGACTGCCTCA
GAATGGAAGACTGAAAAACAATTTTCCAAGCAAATGATTCAAATAAACAA
GCTGGAGTAGCCATTCTAATATCAAATAAAATCGACTTCCAACACAAAGT
TATCAAAAAAGATGAGGACAGGCACTTCATACTCATCAAAAGTAAAATCT
CCCAAAATGAACTCTCAAGTATGAATATCTATGCTCCAAATGCAAGGGCA
GTCACATTCATTAAGGAAACTTTAGTAAAGGTCAAAGCGCATATTGCACC
TCATACAATAATAGTGAAAGAACTTCACACCCCACTCT

CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACACAGAGGCGGAAAGTATGAACTA
ACACAAACTGTCCTCTGACACACACACACACACACACACACACACACACA
CACACACACACACACACACACATGCCTGTACACACAGGCTTGAGTCTCAC
ACGCACAAGCACACAATAAATAATAAATGAATGAATACATAATCCTCACA
TAATGAAAGTAGAAAAATAGTAAAAAAATAAAAAAAGATAGTAAAGTTCA
ACAAAAGTTTATCATCAGTTTTTTGGTTTGGTTTGGATTGGTTTGGCTTG
GTTTGTTGTTGTAGCTGTTTAGGAAAACCTCACTATATATATATATATAT
ATATATATATATATATATATATATATATATATATATACATATATATATAG
TGTGTATACATGTATATATACATGTATATATACATATATTGATATATTGC
ATATATCAATTGAATATATTGACATATCTGATATATATCAGAGAAAATAG
AATGACAAATACTTTAAAAACTTACAGAAATTGAAAATAATCAAATTATA
GTAATTCATAAAAGTTTAAATCAAAAACCTAATCATAATCTCACAAGATT
AAGAGGGGTAGGCTAAAGAGAAAGAGTGAAGTGGTACTAGAAAACTGCTG
TGAGTCCCATTATATATTTTTAAAAATATGTACAGGTGGAAAGGTAATCA
ACTTTGAACAGTTAACAGAAAGATATAGT

Query= MSMg01no515_h02.g1 MSMg01no515_h02.g1 CHROMAT_FILE:
MSMg01no515_h02.g1 PHD_FILE: MSMg01no515_h02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:46 2005
         (626 letters)



>mm_chr3_5776481_5777506
          Length = 1026

 Score =  938 bits (485), Expect = 0.0
 Identities = 532/569 (93%), Gaps = 34/569 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   acacagaggcggaaagtatgaactaacacaaactgtcctctgacacacacacacacacac 60
           ||||||||||||||||||||||||||||||||||||||||||        ||||||||||
Sbjct: 535 acacagaggcggaaagtatgaactaacacaaactgtcctctg--------acacacacac 484

                                                                       
Query: 61  acacacacacacacacacacacacacacacacacacatgcctgtacacacaggcttgagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 acacacacacacacacacacacacacacacacacacatgcctgtacacacaggcttgagt 424

                                                                       
Query: 121 ctcacacgcacaagcacacaataaataataaatgaatgaatacataatcctcacataatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ctcacacgcacaagcacacaataaataataaatgaatgaatacataatcctcacataatg 364

                                                                       
Query: 181 aaagtagaaaaatagtaaaaaaataaaaaaagatagtaaagttcaacaaaagtttatcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aaagtagaaaaatagtaaaaaaataaaaaaagatagtaaagttcaacaaaagtttatcat 304

                                                                       
Query: 241 cagttttttggtttggtttggattggtttggcttggtttgttgttgtagctgtttaggaa 300
           ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 303 cagttttttggtttggtttggtttggtttggcttgatttgttgttgtagctgtttaggaa 244

                                                                       
Query: 301 aacctcactatatatatatatatatatatatatatatatatatatatatatatatatata 360
           |||||||||||||||||||||||||||||||||| |||||||||||||            
Sbjct: 243 aacctcactatatatatatatatatatatatatacatatatatatata------------ 196

                                                                       
Query: 361 tacatatatatatagtgtgtatacatgtatatatacatgtatatatacatatattgatat 420
                         ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 --------------gtgtgtatacatgtatatatacatgtatatatacatatattgatat 150

                                                                       
Query: 421 attgcatatatcaattgaatatattgacatatctgatatatatcagagaaaatagaatga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 attgcatatatcaattgaatatattgacatatctgatatatatcagagaaaatagaatga 90

                                                                       
Query: 481 caaatactttaaaaacttacagaaattgaaaataatcaaattatagtaattcataaaagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  caaatactttaaaaacttacagaaattgaaaataatcaaattatagtaattcataaaagt 30

                                        
Query: 541 ttaaatcaaaaacctaatcataatctcac 569
           |||||||||||||||||||||||||||||
Sbjct: 29  ttaaatcaaaaacctaatcataatctcac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 134
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)