Query= MSMg01no515_p20.b1 MSMg01no515_p20.b1 CHROMAT_FILE:
MSMg01no515_p20.b1 PHD_FILE: MSMg01no515_p20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:32 2005
(620 letters)
>mm_chr3_115442375_115443393
Length = 1019
Score = 1141 bits (590), Expect = 0.0
Identities = 608/614 (99%), Gaps = 1/614 (0%)
Strand = Plus / Minus
Query: 7 gaattcacttcatgtccatggggcaggaggaagggcttcagtcttgccaaaggctggtgt 66
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gaattcacttcatgcccatggggcaggaggaagggcttcagtcttgccaaaggctggtgt 561
Query: 67 tcctggaatccaaagcaacttaaaaagtaagtttgaggacaatgacagtgataggcttct 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcctggaatccaaagcaacttaaaaagtaagtttgaggacaatgacagtgataggcttct 501
Query: 127 atgacttcatcccaggcaaaggggacacatagatgcagactgaagacatagatgcagtcc 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atgacttcatcccaggcaaaggggacacatagatgcagactgaagacatagatgcagtcc 441
Query: 187 ttcatcctgcttgcctggacctacgtgaggcgtcagtatcacttagcaaaagccacctgc 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttcatcctgcttgcctggacctacgtgaggcgtcagtatcacttagcaaaagccacctgc 381
Query: 247 tactgccagtgtcccttatctcttctatacgtcactcaagtgtaggatcttttggcaggg 306
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 380 tactgccagtgtcccttatctcttctacacgtcactcaagtgtaggatcttttggcaggg 321
Query: 307 aacaggtggcatgactcagtgtaccatgctcttattgaattttatttcattttacattcc 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aacaggtggcatgactcagtgtaccatgctcttattgaattttatttcattttacattcc 261
Query: 367 tgcatttattttgtgtgtgcacaaatgtacatgtatgtgggtatatgtaggcacatgtgt 426
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgcatttattttgtgtgtgcac-aatgtacatgtatgtgggtatatgtaggcacatgtgt 202
Query: 427 ggatacctgtagaggtccaaggtcaacctttggtattttcttgaataactcaccaacttg 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggatacctgtagaggtccaaggtcaacctttggtattttcttgaataactcaccaacttg 142
Query: 487 tttgagacagtctctccagtttatgtggcgcttgctgattaagtcaggatgactagccat 546
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 141 tttgagacagtctctccagtttatatggcgcttgctgattaagtcaggatgactagccat 82
Query: 547 tgaggcctagggacccccatgtctctgcctttttgtcaccaggaatacaaacatggatgg 606
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 taaggcctaggtacccccatgtctctgcctttttgtcaccaggaatacaaacatggatgg 22
Query: 607 gcatacttggcttt 620
||||||||||||||
Sbjct: 21 gcatacttggcttt 8
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1019
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1009
Effective search space: 615490
Effective search space used: 615490
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no515_p20.g1 MSMg01no515_p20.g1 CHROMAT_FILE:
MSMg01no515_p20.g1 PHD_FILE: MSMg01no515_p20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:33 2005
(606 letters)
>mm_chr3_115283115_115284121
Length = 1007
Score = 1122 bits (580), Expect = 0.0
Identities = 600/610 (98%), Gaps = 7/610 (1%)
Strand = Plus / Plus
Query: 1 accagtctctgaaggttctgaaataatgatgtgctgcggataaagacacaccatttattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accagtctctgaaggttctgaaataatgatgtgctgcggataaagacacaccatttattt 260
Query: 61 tattattctctccaactgaggacgggaagaagaagaagaaaaagaaacagttattcagcg 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 tattattctctccaactgaggacgggaagaagaagaa---aaagaaacagttattcagcg 317
Query: 121 gcaaagataagaaacaggctctttttaatacaattacaatttcaaagggcttgccaagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gcaaagataagaaacaggctctttttaatacaattacaatttcaaagggcttgccaagaa 377
Query: 181 aatactttcagctgccaactcagcaattttccaaagacttcctaacacaggaaaaaaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aatactttcagctgccaactcagcaattttccaaagacttcctaacacaggaaaaaaaaa 437
Query: 241 aagattaatggggaaaaaattatcaggcacaacttgactgtaccttacataagagtaggg 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aggattaatggggaaaaaattatcaggcacaacttgactgtaccttacataagagtaggg 497
Query: 301 agcatataaaacattattgcattctattctttgcttgccttagacgcccccaaaaatctg 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 498 agcatataaaacattattgcattctattctttgcttgccttagaggcccccaaaaatctg 557
Query: 361 accaggctgcccgatgctgtaaccttatgaataccaaatctgttccattataataccaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 accaggctgcccgatgctgtaaccttatgaataccaaatctgttccattataataccaca 617
Query: 421 aggcccttctgggctttgctcaccacagccattaccatgtttttgaaagcatttattggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aggcccttctgggctttgctcaccacagccattaccatgtttttgaaagcatttattggg 677
Query: 481 tccaggtttgcacataataaaatctgtagatgctgagaaaaagaaaagaaaaaaaaaaa- 539
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 678 tccaggtttgcacataataaaatctgtagatgctaagaaaaagaaaagaaaaaaaaaaaa 737
Query: 540 ---ccctcctcagaatgcagaaaggcacaggtgagaaacaactccagtgtgacttcctca 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 aaaccctcctcagaatgcagaaaggcacaggtgagaaacaactccagtgtgacttcctca 797
Query: 597 ccccaccggc 606
||||||||||
Sbjct: 798 ccccaccggc 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1007
Length adjustment: 10
Effective length of query: 596
Effective length of database: 997
Effective search space: 594212
Effective search space used: 594212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
