Query= MSMg01no516_d04.b1 MSMg01no516_d04.b1 CHROMAT_FILE:
MSMg01no516_d04.b1 PHD_FILE: MSMg01no516_d04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:50 2005
(657 letters)
>mm_chr3_123136117_123137173
Length = 1057
Score = 1079 bits (558), Expect = 0.0
Identities = 591/616 (95%), Gaps = 23/616 (3%)
Strand = Plus / Minus
Query: 4 ggaattcaactcttcttgc-aaagcattttatgttctaaaccactgagccatctctctgt 62
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ggaattcaactcttcttgcaaaagcattttatgttctaaaccactgagccatctctctgt 557
Query: 63 gtcccatcggcaggcttctaacagctgaccttcacctgacttttatgcacacacattagt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gtcccatcggcaggcttctaacagctgaccttcacctgacttttatgcacacacattagt 497
Query: 123 aaactgattagtaacttttcttaccatcagcaaggagatttattctcataatgttcttgc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aaactgattagtaacttttcttaccatcagcaaggagatttattctcataatgttcttgc 437
Query: 183 tgtttctagacaagggaacactatgttgtctaaaggacagtgggtagtccaacagtcatt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tgtttctagacaagggaacactatgttgtctaaaggacagtgggtagtccaacagtcatt 377
Query: 243 tactagtttagacttgctatagtctacagagttgcatccacagacacaatgtaatttcac 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tactagtttagacttgctatagtctacagagttgcatccacagacacaatgtaatttcac 317
Query: 303 ggaaatgttacacaagaatgctttttaaactactgtctgctgcactgtaagcactca--- 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ggaaatgttacacaagaatgctttttaaactactgtctgctgcactgtaagcactcaaga 257
Query: 360 -------------------agagagagagagagagagagagagagatagttagatgcagt 400
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gagagagagagagagagagagagagagagagagagagagagagagatagttagatgcagt 197
Query: 401 gggacagtgggtgttttgtcccgtttcctgtctttgtgttaactccttctttgctcagta 460
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 196 gggacaatgggtgttttgtcccgtttcctgtctttgtgttaactccttgtttgctcagta 137
Query: 461 taattagagagctgaaagtttattccctcccacagaatgtgttgagcagtaatttcccaa 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 taattagagagctgaaagtttattccctcccacagaatgtgttgagcagtaatttcccaa 77
Query: 521 tcgaaaccgagatggagccggcaaaggcaagctgtgatggacccttgagcacacactacc 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 tcgaaaccgagatggagccggcaaaggcaagctgtgatggacccttgagcacacactacc 17
Query: 581 attaaggggggagggg 596
||||||||||||||||
Sbjct: 16 attaaggggggagggg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_d04.g1 MSMg01no516_d04.g1 CHROMAT_FILE:
MSMg01no516_d04.g1 PHD_FILE: MSMg01no516_d04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:50 2005
(634 letters)
>mm_chr3_122970688_122971721
Length = 1034
Score = 1176 bits (608), Expect = 0.0
Identities = 632/648 (97%), Gaps = 14/648 (2%)
Strand = Plus / Plus
Query: 1 ctcccaggaccagggaagagggctgggcggcttccagtcccctgctgtgagcatcgctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ctcccaggaccagggaagagggctgggcggcttccagtcccctgctgtgagcatcgctgt 246
Query: 61 cccgctccccttccgctgctgctgcgtgggtgcgccggtgcggtcttctgaaggctctgg 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 cccgctccccttccgcagctgctgcgtgggtgcgccggtgcggtcttctgaaggctctgg 306
Query: 121 gctgcacggggccaagcgactgccacgtctctctaggcgcagtgggaggagggaaagtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gctgcacggggccaagcgactgccacgtctctctaggcgcagtgggaggagggaaagtgt 366
Query: 181 tgtcaggaacacagtgaactagagacctttgtctgcctttctgtcctccgttagcaagac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tgtcaggaacacagtgaactagagacctttgtctgcctttctgtcctccgttagcaagac 426
Query: 241 agtgacctcatcatactcatggttgctactcggaagctgaaggtttaatatgaaaacaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 agtgacctcatcatactcatggttgctactcggaagctgaaggtttaatatgaaaacaaa 486
Query: 301 gctaaatcgtggatgttagtcttcacgtttgaaatttgcatgccatttccagaataaaga 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gctaaatcatggatgttagtcttcacgtttgaaatttgcatgccatttccagaataaaga 546
Query: 361 gatccca-gtcttacttagaaggtattactaatctttaccttaaacc------------- 406
||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gatcccacgtcttacttagaaggtattactaatctttaccttaaaccactaccttaaacc 606
Query: 407 gcagcaacgagaaagaaaggagaggtacccaaatgcttgatggagaaactggaaagaaac 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gcagcaacgagaaagaaaggagaggtacccaaatgcttgatggagaaactggaaagaaac 666
Query: 467 tagagaatcagggtttcacaactaatatggcttttggacacttcattttctaaaacagaa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tagagaatcagggtttcacaactaatatggcttttggacacttcattttctaaaacagaa 726
Query: 527 aactgaggcccaaagaacctcttcagtttactgtgtcacaaagctttgcatgggcagata 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 aactgaggcccaaagaacctcttcagtttactgtgtcacaaagctttgcatgggcagata 786
Query: 587 ggaaacaaatcataattcttttgccaggcttcagagcacctcctgtct 634
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 ggaaacaaatcataattcttttgccaggcttcagagcacctcctgtct 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
