Query= MSMg01no516_g17.b1 MSMg01no516_g17.b1 CHROMAT_FILE:
MSMg01no516_g17.b1 PHD_FILE: MSMg01no516_g17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:08 2005
(711 letters)
>mm_chr3_11868723_11869833
Length = 1111
Score = 1170 bits (605), Expect = 0.0
Identities = 683/709 (96%), Gaps = 5/709 (0%)
Strand = Plus / Plus
Query: 6 aatcagcagcaatccaagatgtatcctaaatatccatgtctgatacgttaagcaacttgg 65
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 205 aatcagcagcaatccaagatgtatcctaaatatccatgtctgatactttaagcaacttgg 264
Query: 66 aaccaccctgaatccatgagaggtaactgagggataaatcaataaataacctatattgat 125
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 265 aaccaccctgaatccatgagaggtaactgagggataaatcaataaataacctacattgat 324
Query: 126 tcaggagtcacttccactaccctgaccaaccattctaaagatttctcctggttgacactg 185
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttagtagtcacttccactaccctgaccaaccattctaaagatttctcctggttgacactg 384
Query: 186 gagtttttgttcatttatggttattgtgggtagcattagtaaagtaaag-g-ggggggta 243
| |||||||||||||||| |||||||||||||||||||||||||||||| | |||| | |
Sbjct: 385 gggtttttgttcatttatagttattgtgggtagcattagtaaagtaaagagtggggag-a 443
Query: 244 agtgatataattcaatttcaattaaaattatatttaaaatgaaaatcaaattgaaattaa 303
||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 444 agtgatataattctatttcaattaaaattacatttaaaatgaaaatcaaattaaaattaa 503
Query: 304 agcagtatattatttttctagcatggaaatgacagtgggtacttacttctcctttatcaa 363
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 504 agcagtatattatttttctagcatgaaaatgacagtgggtacttacttctcctttatcaa 563
Query: 364 gctacttaacaggagtttctaacttcacaaagaataaacaattataattggaacttcatg 423
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 564 gatacttaacaggagtttctaacttcacaaaggataaacaattataattggaacttcatg 623
Query: 424 agtataatacatttcatacttttagatagtaaaagtctcttcattgattgattaaattac 483
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 624 agtataatacttttcatacttttagatagtaaaagtctcttcactgattgattaaattac 683
Query: 484 attgtgctattagtgttag-tttttctcctattctagcttggcagtgcacattccagaaa 542
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 attgtgctattagtgtt-gatttttctcctattctagcttggcagtgcacattccagaaa 742
Query: 543 gatgaatgttacagtgaagatttagtaagacaagacagctttcctctctggacattttgt 602
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 743 gatgaatgttacagtgaagatttagtaagatgagacagctttcctctctggacattttgt 802
Query: 603 tacataaaatcttgtcagtttgacgtttgttcctcttacttcatgattttgttccatttt 662
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 803 tacataaaatcttgtcagtttgacatttgttcctctaacttcatgattttgttccatttt 862
Query: 663 tctctttctcccttgctaaatttatcaagtgatgaggtgcactttgcta 711
|||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 863 tctcttcctcccttgctaaatttatcaagtgatgaagtgcactttgcta 911
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 1111
Length adjustment: 10
Effective length of query: 701
Effective length of database: 1101
Effective search space: 771801
Effective search space used: 771801
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no516_g17.g1 MSMg01no516_g17.g1 CHROMAT_FILE:
MSMg01no516_g17.g1 PHD_FILE: MSMg01no516_g17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:08 2005
(679 letters)
>mm_chr3_11893125_11894203
Length = 1079
Score = 1199 bits (620), Expect = 0.0
Identities = 665/680 (97%), Gaps = 2/680 (0%)
Strand = Plus / Minus
Query: 1 agaataaacatcaattttaagactatacagtattatttttttgtgtgatatgagacaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 agaataaacatcaattttaagactatacagtattatttttttgtgtgatatgagacaaat 820
Query: 61 aaaacacctataaaagttattacccagacttttcagtgccttattaccatttaaactggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 aaaacacctataaaagttattacccagacttttcagtgccttattaccatttaaactggc 760
Query: 121 ttcaaaaactaaagaaaagaatagaagactttatagggataggtgccacataacagtgcc 180
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 759 ttcaaaaactaaagaaaagaatagaagactttataaagataggtgccacataacagtgcc 700
Query: 181 caccatggcaagtataatttacatggatgattttacacaacccctacatatataccatat 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 caccatggcaagtaaaatttacatggatgattttacacaacccctacatatataccatat 640
Query: 241 gtttaaagcatcaataattttctctgggtagactcaagatgagccaaatttatccatggc 300
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||
Sbjct: 639 gtttaaagcatcaataatttcctctgggtagactcaagatgaaccaaatttatccgtggc 580
Query: 301 aagtctcactctgcctcagagactcacattttacacagaaagaaatcaatatttaataaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 aagtctcactctgcctcagagactcacattttacacagaaagaaatcaatatttaataaa 520
Query: 361 ctactgaaacataatattgacattgaaaataactggcataaagtgtttgatagacacttg 420
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 519 ctactgaaacataatattgacatagaaaatagctggcataaagtgtttgatagacacttg 460
Query: 421 aaataatccatggtaatgctattgatacaatttcatggaattttcataagtatccctagc 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 aaataacccatggtaatgctattgatacaatttcatggaattttcataagtatccctagc 400
Query: 481 aggctaattcaacat-agaaattaactgtgtgggctatccatataagtaattggtagaca 539
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 aggctaattcaacatca-aaattaactgtgtgggctatccatataagtaattggtagaca 341
Query: 540 ttttgcctcatagttaattacaaagacttggatttgatattcaaagctacaaaaataatt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ttttgcctcatagttaattacaaagacttggatttgatattcaaagctacaaaaataatt 281
Query: 600 tttaaaagcataattgaggataaattgagaataatgcaaaagtgaaagaataggcatcta 659
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 280 taaaaaagcataattgaggataaattgagaataatgcaaaagtgagagaataggcatcta 221
Query: 660 tgacctgagctggtcctgtg 679
|| |||||||||||||||||
Sbjct: 220 tgccctgagctggtcctgtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space: 715161
Effective search space used: 715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
