Query= MSMg01no516_h16.b1 MSMg01no516_h16.b1 CHROMAT_FILE:
MSMg01no516_h16.b1 PHD_FILE: MSMg01no516_h16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:13 2005
(644 letters)
>mm_chr3_79263822_79264865
Length = 1044
Score = 791 bits (409), Expect = 0.0
Identities = 424/429 (98%)
Strand = Plus / Minus
Query: 216 tgaggaggaggtgagagtttgaaatcctgatccataggcagaaacagagagagactgagc 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 tgaggaggaggtgagagtttgaaatcctgatccataggcagaaacagagagagactgagc 985
Query: 276 ctgcctggcgtgggctttcagaacctccaacaggtccactcctaatcctgctaatccttc 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 ctgcctggcgtgggctttcagaacctccaacaggtccactcctaatcctgctaatccttc 925
Query: 336 ccaatagtgccactccttggagactaagcattcaatgagcccacagggaccagggactgt 395
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 924 ccaatagtgccactccttggagactaagcattcaatgagcccacagggaccggggactgt 865
Query: 396 gctcattcaaaccagcaccgctggcatatgttcttttgggtaatccattttaaagtattt 455
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 gctcattcaaaccagcaccactggcatatgttcttttgggtaatccattttaaagtattt 805
Query: 456 tcccttttggaggccttgagctttcgcagttaatttgcaagctacttctgctggttttcc 515
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 804 tcccttttggaggccttgagctttcgcagttaatttgcaagctacttctactggttttcc 745
Query: 516 ttctcagcctcatcctgtaatcctgcctcagatgccccaatgctggatctgttcccgtgg 575
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 744 ttctcagcctcatcctgtaatcctgcctcagatgccccagtgctggatctgttcccgtgg 685
Query: 576 ttacaggactttatcctactgtctgactccgacaagtgccattcacagtcttagaaagag 635
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 684 ttacaggactttatcctactgtctgactccgacaagtgccgttcacagtcttagaaagag 625
Query: 636 attgaatta 644
|||||||||
Sbjct: 624 attgaatta 616
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_h16.g1 MSMg01no516_h16.g1 CHROMAT_FILE:
MSMg01no516_h16.g1 PHD_FILE: MSMg01no516_h16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:13 2005
(636 letters)
>mm_chr3_79218317_79219352
Length = 1036
Score = 1118 bits (578), Expect = 0.0
Identities = 631/664 (95%), Gaps = 29/664 (4%)
Strand = Plus / Plus
Query: 1 caggacagccagggctgtacagagaaaccctgtcttgaaaaacaaagaaagaaacagaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggacagccagggctgtacagagaaaccctgtcttgaaaaacaaagaaagaaacagaca 260
Query: 61 aaagaatgcaggtagtatgaaaagggaatggggaataattaggaagaaggattaaattgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagaatgcaggtagtatgaaaagggaatggggaataattaggaagaaggattaaattgg 320
Query: 121 atggtgaataggaaggagcacaaggtagacgttccctctatctgtggggaatgattactc 180
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 atggtgaagaggaaggagcacaaggtagacgttccctctatctgtggggaacgattactc 380
Query: 181 acagtaaagacctttgaaaccgtcatggaaacctaaaggattcctaaactgtgcaggctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagtaaagacctttgaaaccgtcatggaaacctaaaggattcctaaactgtgcaggctg 440
Query: 241 gcc-tccaactcagagattcccctgcctctgcctcctgagtactggga---g-------a 289
||| || ||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 441 gccctc-aactcagagattcccctgcctctgcctcctgagtactgggatatgtatatgta 499
Query: 290 tatatatatatatatatatacacacaca----------------tatatgtatctccata 333
|||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 500 tatatatatatatatatatacacacacacacacacacacacacatatatgtatctccata 559
Query: 334 ataggagaaggcaaacaataccccacctagacaccaaaaa-ctattaaatataaacccca 392
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 560 ataggagaaggcaaacaataccccacctagacaccaaaaaactattaaatataaacccca 619
Query: 393 gaccaggaatggtttacctctttggggattgtttattaggaggggtcccctcaaccttaa 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gaccaggaatggtttacctctttggggattgtttattaggaggggtcccctcaaccttaa 679
Query: 453 agcattctaggctactgctcttgcttctggttaccctctggaacttgacagtaagacccc 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agcattctaggctactgctcttgcttctggttaccctctggaacttgacagtaagacccc 739
Query: 513 atggctgaagagaacacacagttgagtcctagaacacggagaaatcaagctggtactgac 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 atggctgaagagaacacacagttgagtcctagaacacggagaaatcaagctggtactgac 799
Query: 573 ctgcaagctgcacccctactgcctggctttctcagcgctggaaggtgctatgggtgctcc 632
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 800 ctggaagctgcacccctactgcctggctttcccagcgctggaaggtgctatgggtgctcc 859
Query: 633 cgga 636
||||
Sbjct: 860 cgga 863
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space: 642276
Effective search space used: 642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
