Query= MSMg01no516_h18.b1 MSMg01no516_h18.b1 CHROMAT_FILE:
MSMg01no516_h18.b1 PHD_FILE: MSMg01no516_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:14 2005
(706 letters)
>mm_chr3_132714957_132716058
Length = 1102
Score = 1040 bits (538), Expect = 0.0
Identities = 563/576 (97%), Gaps = 9/576 (1%)
Strand = Plus / Minus
Query: 131 caaggcttctgacccctcctcagttagtgctcaactgcagctgtgaaggaaactgtcaac 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1102 caaggcttctgacccctcctcagttagtgctcaactgcagctgtgaaggaaactgtcaac 1043
Query: 191 cagagaccttcctgggacatctgagcatcttctggttggactgtgtgacagtagcatgcg 250
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1042 cagagaccttcctgggacatctgagcatcttctggtcggactgtgtgacagtagcatgca 983
Query: 251 ccttttcttagggtcaaagatacatgtgcacttcaagaaactagcttgtactaaaaggtt 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 ccttttcttagggtcaaagatacatgtgcacttcaagaaactagcttgtactaaaaggtt 923
Query: 311 tgtttgttttgttttgttttgttttaacttttttactagcttcctatcatcacaggtaat 370
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 tg-----tttgttttgttttgttttaacttttttactagcttcctatcatcacaggtaat 868
Query: 371 tgggccatagttaacaggctttgatgttttataatgggacaccttttgctggaaattcat 430
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 tgggccatagttaacaagctttgatgttttataatgggacaccttttgctggaaattcat 808
Query: 431 aaatattgaaaaaggtaaattggttttaatggtgtttaagttactgtgttggcataatga 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 aaatattgaaaaaggtaaattggttttaatggtgtttaagttactgtgttggcataatga 748
Query: 491 gaaatggggaaaactttctgttctaaactaaagacaattgtaataaagtgtttgtttaca 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 gaaatggggaaaactttctgttctaaactaaagacaattgtaataaagtgtttgtttaca 688
Query: 551 gccaccaacatcactccattgaagataaaagaactggctgcagaagatattggcaaatgt 610
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 687 gccaccaacatcactccattgaagataaaagaactggctgcagaaaatattggcaaatgt 628
Query: 611 atatgtctactcaacatacttttccagaaagctctgaaagacttctttctgttcctaatt 670
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 627 atatgtctactcaacatacttttccagaaagctctgaaagac----ttctgttcctaatt 572
Query: 671 aataaagctaattctattttaagtattatctcacat 706
||||||||||||||||||||||||||||||||||||
Sbjct: 571 aataaagctaattctattttaagtattatctcacat 536
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1102
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1092
Effective search space: 760032
Effective search space used: 760032
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no516_h18.g1 MSMg01no516_h18.g1 CHROMAT_FILE:
MSMg01no516_h18.g1 PHD_FILE: MSMg01no516_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:14 2005
(665 letters)
>mm_chr3_132572330_132573394
Length = 1065
Score = 1178 bits (609), Expect = 0.0
Identities = 651/665 (97%)
Strand = Plus / Plus
Query: 1 tctctaagcaatgccccagtgatcattaaaattctttgacatggataacacaggggaaaa 60
|||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct: 201 tctctaagcaatgccccagtgatcgttaaaattctttgacatggagaacacgggggaaaa 260
Query: 61 acacactgagaaaaacattagaagatgtgattcctgctctagatacaatttataaaccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacactgagaaaaacattagaagatgtgattcctgctctagatacaatttataaaccca 320
Query: 121 tttaatgttggcctgcacaataagaagaatgtcatgtatataaatgtgcgcctctggttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaatgttggcctgcacaataagaagaatgtcatgtatataaatgtgcgcctctggttt 380
Query: 181 tgatctttcgttcctcgggcgcgcacacaaacacgctcacacatcctgttgggtggagat 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatctttcattcctcgggcgcgcacacaaacacgctcacacatcctgttgggtggagat 440
Query: 241 gaagaggcagcctccccagaggcaggctaccaaagcatgtcagaaatcaagcctagagca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaagaggcagcctccccagaggcaggctaccaaagcatgtcagaaatcaagcctagagca 500
Query: 301 cttggaaaacagttaagattcttgacatacttgagcaggacccgtctggcagcagcatgt 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttagaaaacagttaagattcttgacatacttgagcaggacccgtctggcagcagcatgt 560
Query: 361 atccgttgagacagtagcacttgtagctgccgaaagtgttcatgcacctgtgcttacagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atccgttgagacagtagcacttgtagctgccgaaagtgttcatgcacctgtgcttacagg 620
Query: 421 gtcgaggcttcaggccacactcgtttaaatctgcggacagtgaggggttaaatcagagac 480
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gccgaggcttcaggccacactcgtttaaatctgcggacagtgaggggttaaatcagagac 680
Query: 481 atcacagcctcagcagtgctgggaaacgttcaaaacacccctcagtggagaagatgaggg 540
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atcacagccttggcagtgctgggaaacgttcaaaacacccctcagtggagaagatgaggg 740
Query: 541 caaaaatgggtcaagacagcgaaagcatcactttggagacagataaaaatccgagcgtat 600
||||||||||||||||||||||||||||||||| || ||||||||||| |||| || |||
Sbjct: 741 caaaaatgggtcaagacagcgaaagcatcacttcggtgacagataaaagtccgtgcatat 800
Query: 601 catcctaactcgaatactacattgggagcacccagaggctgcttgggactttatggatct 660
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 catcctaactcgaataccacattgggagcacccagaggctgcttgggactttatggatct 860
Query: 661 ctgag 665
|||||
Sbjct: 861 ctgag 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
