BAC Information

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BAC

Clone NameMSMg01-516L20
Chromosome3 (Build37)
Map Location 69,327,792 - 69,474,364
singlet/doubletdoublet
Overlap genePpm1l, LOC667309, B3galnt1
Upstream geneSchip1, Il12a, LOC639530, 1110032F04Rik, Ift80, Smc4, Trim59, LOC667272, Kpna4, Arl14
Downstream geneRpl32-ps, Nmd3, LOC100041334, 1110032A04Rik, Gm414, LOC100041384, LOC625868, LOC670542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516L20.T7 (MSMg01no516_l20.b1)MSMg01-516L20.TJ (MSMg01no516_l20.g1)
ACCAG588664AG588665
length757754
length of high quality
(start - end)		697 (51 - 747)623 (82 - 704)
definitionCHROMAT_FILE: MSMg01no516_l20.b1 PHD_FILE: MSMg01no516_l20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:35 2005CHROMAT_FILE: MSMg01no516_l20.g1 PHD_FILE: MSMg01no516_l20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,473,927 - 69,474,364)(69,327,792 - 69,328,414)
sequence
NNNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTGTAAAATGAATTATAGATTCCAGCTAGCCCGCATAAAAG
ACACAAAATCCTGGTATTTTATTTGCAAGCTGTAAGGCTAGATTGGACAG
GGTGTGAGCTCCTGTAACTTCCACCCCAGCCATATGACCCTTGTTACTCG
CTGTTTGAGTCTCGCCCGGGTTATTCCTCTTCCATCAGCCTGTCCTCAGG
GTCCACTGTGCTCTTGGCCTGTCTCCTCTCTCCACTTCCTTTCTCCTTAT
TCTCCTGGTCTCTCCCAAGACCTTTCACTCAATCCTCAAGTCCCTCCTTT
CTCTCTCTACTGCCCAATCACAGCCAACTAGACTGGGGAGCAAGGTTTAC
AAAGCAAAGACTGGTATATGTGAGAATTTGCTCATCTGGAGGCAACCAGA
TCTTGGGGGCCCACTATTTAGCATTTGAATACATAGCAGCACCAGACCAA
GCCCCAACAGATTTCTGTCTGTGTGGATTTTATATAGGTCAGGGCAGAGC
TCCTGCTACAACCAGATGAGAGTTGACTCATGGGTAAAATTGGCCACAAT
GGAGAGAGTCCATTTTGAAACTTCTTCTGGACTAGAATAAATTACAAACT
CATCAGGGCTGAAACAAGAAATATCTTAAATATGAAGTTGAGTTTCCATA
CACTATAGAGGCAATTACCAGAGGCAAAACTTAAGAGTACATTGTTTCTT
ACAACGA

NNNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGCTGCCTCTGATTC
CCAAGTGCTAGGATTGAAGTCAGGCACCACCTTGCCTGCTCACTTGTGGG
CTTCCATAAATGAGTTTGTATATTCATGACCTACAGTCAGAGAAATATCC
TCTATATACTTTTATTTACTATGGGCATATGCATTACAGTGCATGTCTGG
ATGTCAGAACAAGTTGCTGGAGTCGATTCTCTCCTTGGACCTTGGGGTCC
CCAAGGATTGAGCTCAGGTCATCAGGTTTAGGGGTTTGGTGCCTTTAGCT
CCATTATCCAGTCCATTATCCAGCTATTTTTCTGACCCCAAGAAACACCC
ATTTAATGAATAATAATGGTCTGAAGTAACTACAAAAGAAAAATCTACAT
GCTTTCCATTAAAGTCGTGAATTATGCTGTCTGAAGAACAGGATGGGGCA
GGAACCCCATGATCACTTTACATTTTGTGAAACTCCTGCTCTAGATGGCT
TTGAAGCTGCGGTGTCATCAGATGGCCAGTTGCTTAGGAATGGAAGACAG
TAGCTGCTAGTCACAGGGACAGCCAAAGACATCAAGAAGCCCATTTCTGC
CAACACCCTGAGCGAACTTGGAAGAGGCTCTGCTGCCATTTCTGTCTCTT
TGGAAGGCTAAGCAGAGGCCCTGGCACAGCTGGGCCCAGATTCCAGTACT
CGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_l20.b1 MSMg01no516_l20.b1 CHROMAT_FILE:
MSMg01no516_l20.b1 PHD_FILE: MSMg01no516_l20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:35 2005
         (697 letters)



>mm_chr3_69473268_69474364
          Length = 1097

 Score =  839 bits (434), Expect = 0.0
 Identities = 437/438 (99%)
 Strand = Plus / Minus

                                                                        
Query: 260  ctctcccaagacctttcactcaatcctcaagtccctcctttctctctctactgcccaatc 319
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1097 ctctcccaagacctctcactcaatcctcaagtccctcctttctctctctactgcccaatc 1038

                                                                        
Query: 320  acagccaactagactggggagcaaggtttacaaagcaaagactggtatatgtgagaattt 379
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1037 acagccaactagactggggagcaaggtttacaaagcaaagactggtatatgtgagaattt 978

                                                                        
Query: 380  gctcatctggaggcaaccagatcttgggggcccactatttagcatttgaatacatagcag 439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977  gctcatctggaggcaaccagatcttgggggcccactatttagcatttgaatacatagcag 918

                                                                        
Query: 440  caccagaccaagccccaacagatttctgtctgtgtggattttatataggtcagggcagag 499
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917  caccagaccaagccccaacagatttctgtctgtgtggattttatataggtcagggcagag 858

                                                                        
Query: 500  ctcctgctacaaccagatgagagttgactcatgggtaaaattggccacaatggagagagt 559
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857  ctcctgctacaaccagatgagagttgactcatgggtaaaattggccacaatggagagagt 798

                                                                        
Query: 560  ccattttgaaacttcttctggactagaataaattacaaactcatcagggctgaaacaaga 619
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797  ccattttgaaacttcttctggactagaataaattacaaactcatcagggctgaaacaaga 738

                                                                        
Query: 620  aatatcttaaatatgaagttgagtttccatacactatagaggcaattaccagaggcaaaa 679
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737  aatatcttaaatatgaagttgagtttccatacactatagaggcaattaccagaggcaaaa 678

                              
Query: 680  cttaagagtacattgttt 697
            ||||||||||||||||||
Sbjct: 677  cttaagagtacattgttt 660


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space:   746769
Effective search space used:   746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no516_l20.g1 MSMg01no516_l20.g1 CHROMAT_FILE:
MSMg01no516_l20.g1 PHD_FILE: MSMg01no516_l20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:35 2005
         (623 letters)



>mm_chr3_69327592_69328614
          Length = 1023

 Score = 1166 bits (603), Expect = 0.0
 Identities = 618/623 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagagctgcctctgattcccaagtgctaggattgaagtcaggcaccaccttgcctgctc 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagagctgcttctgattcccaagtgctaggattgaagtcaggcaccaccttgcctgctc 260

                                                                       
Query: 61  acttgtgggcttccataaatgagtttgtatattcatgacctacagtcagagaaatatcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttgtgggcttccataaatgagtttgtatattcatgacctacagtcagagaaatatcct 320

                                                                       
Query: 121 ctatatacttttatttactatgggcatatgcattacagtgcatgtctggatgtcagaaca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 ctatatacttttatttactatgggcatatgcattacagtgcatgtctggaagtcagaaca 380

                                                                       
Query: 181 agttgctggagtcgattctctccttggaccttggggtccccaaggattgagctcaggtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttgctggagtcgattctctccttggaccttggggtccccaaggattgagctcaggtca 440

                                                                       
Query: 241 tcaggtttaggggtttggtgcctttagctccattatccagtccattatccagctattttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaggtttaggggtttggtgcctttagctccattatccagtccattatccagctattttt 500

                                                                       
Query: 301 ctgaccccaagaaacacccatttaatgaataataatggtctgaagtaactacaaaagaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgaccccaagaaacacccatttaatgaataataatggtctgaagtaactacaaaagaaa 560

                                                                       
Query: 361 aatctacatgctttccattaaagtcgtgaattatgctgtctgaagaacaggatggggcag 420
           ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 aatctacatgcttgccattaaagtagtgaattatgctgtctgaagaacaggatggggcag 620

                                                                       
Query: 421 gaaccccatgatcactttacattttgtgaaactcctgctctagatggctttgaagctgcg 480
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 gaaccccatgatcactttacattttgtgagactcctgctctagatggctttgaagctgcg 680

                                                                       
Query: 481 gtgtcatcagatggccagttgcttaggaatggaagacagtagctgctagtcacagggaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgtcatcagatggccagttgcttaggaatggaagacagtagctgctagtcacagggaca 740

                                                                       
Query: 541 gccaaagacatcaagaagcccatttctgccaacaccctgagcgaacttggaagaggctct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gccaaagacatcaagaagcccatttctgccaacaccctgagcgaacttggaagaggctct 800

                                  
Query: 601 gctgccatttctgtctctttgga 623
           |||||||||||||||||||||||
Sbjct: 801 gctgccatttctgtctctttgga 823


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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