Query= MSMg01no516_m08.b1 MSMg01no516_m08.b1 CHROMAT_FILE:
MSMg01no516_m08.b1 PHD_FILE: MSMg01no516_m08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:38 2005
(452 letters)
>mm_chr3_142656793_142657644
Length = 852
Score = 845 bits (437), Expect = 0.0
Identities = 443/445 (99%)
Strand = Plus / Plus
Query: 5 gaattcccaaggtgacccagaaatcttcttctgtacaaataccaaaatgatatgaaagac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccaaggtgacccagaaatcttcttctgtacaaataccaaaatgatatgaaagac 264
Query: 65 catctcagaaagatagctgccctctacattcattggaacattacacaaaataggcaaaat 124
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catttcagaaagatagctgccctctacattcattggaacattacacaaaataggcaaaat 324
Query: 125 atgtaatagccaaccaatattgtcaatagataagaaaccaaggcatatatggacagtggc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgtaatagccaaccaatattgtcaatagataagaaaccaaggcatatatggacagtggc 384
Query: 185 atattatgcacttaaaaaatatcttgccatttgctaaaatcttgaagaatcttgatatta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atattatgcacttaaaaaatatcttgccatttgctaaaatcttgaagaatcttgatatta 444
Query: 245 tgccaagtgatagaaaacaaatacagaaaggaatccattccctgaactcatatgtggaag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgccaagtgatagaaaacaaatacagaaaggaatccattccctgaactcatatgtggaag 504
Query: 305 ctattctttttccagtactgggtactgaactcagccttgtacatgctaggtgagtcctat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctattctttttccagtactgggtactgaactcagccttgtacatgctaggtgagtcctat 564
Query: 365 actacatagcagcacctgcaatatatgtgtgtatatatgtatatgtatatgtgtgtatat 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 565 actacatagcagcacctgcaatatatgtgtgtatatatgtatatgtatatgtgtatatat 624
Query: 425 atatatgtatatgtgtgtatatatg 449
|||||||||||||||||||||||||
Sbjct: 625 atatatgtatatgtgtgtatatatg 649
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space: 372164
Effective search space used: 372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_m08.g1 MSMg01no516_m08.g1 CHROMAT_FILE:
MSMg01no516_m08.g1 PHD_FILE: MSMg01no516_m08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:38 2005
(553 letters)
>mm_chr3_142820960_142821912
Length = 953
Score = 953 bits (493), Expect = 0.0
Identities = 543/573 (94%), Gaps = 24/573 (4%)
Strand = Plus / Minus
Query: 1 agtgggtcagacgcatgagtaaggctttgaccctgctgccattgaaacagtcacaggcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 agtgggtcagacgcatgagtaaggctttgaccctgctgccattgaaacagtcacaggcat 731
Query: 61 tttgcagttggtggttgtggaatagcatgtggctcctggcactctgggctccaattatcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 tttgcagttggtggttgtggaatagcatgtggctcctggcactctgggctccaattatcc 671
Query: 121 ccattgtgttcacatctgcagcgcaaagtaacatccctactgtgacatctgctctccgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ccattgtgttcacatctgcagcgcaaagtaacatccctactgtgacatctgctctccgga 611
Query: 181 taagagtggccagacactgctcagggattctgggggacggtgaggacttcctccacaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 taagagtggccagacactgctcagggattctgggggacggtgaggacttcctccacaaat 551
Query: 241 ttactttccccattggtacgaagaggggagtctttcccaagtaggtgaaccagtgttatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ttactttccccattggtacgaagaggggagtctttcccaagtaggtgaaccagtgttatg 491
Query: 301 taaaaatagtcaggaagtaggtctgtgggtgtgagtgtgtactatctcagcagggcaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 taaaaatagtcaggaagtaggtctgtgggtgtgagtgtgtactatctcagcagggcaaaa 431
Query: 361 cagaggacagtgtgggg-----g----g----------ccgtaaagttttgaatcattag 401
|||| |||||||||||| | | ||||||||||||||||||||||
Sbjct: 430 cagacgacagtgtggggaaaccgaaaagaaaatattcaccgtaaagttttgaatcattag 371
Query: 402 gtgttgtgatgtttgtgacattaattccaacaagccatagtcttaaatataagaacttgc 461
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 370 gtgttctgatgtttgtgacattaattccaacaagcaatagtcttaaatataagaacttgc 311
Query: 462 acaatttttttcctatcttcaaagatggctacgtaaacttttc-----attttcacatac 516
||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 310 acaattttttttctatcttcaaagatggctacataaacttttcttttcattttcacatac 251
Query: 517 agggttagtacatgcaaataaatgatcccagtc 549
||||||||||||||||||||||| |||||||||
Sbjct: 250 agggttagtacatgcaaataaatcatcccagtc 218
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
