Query= MSMg01no517_d04.b1 MSMg01no517_d04.b1 CHROMAT_FILE:
MSMg01no517_d04.b1 PHD_FILE: MSMg01no517_d04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:12 2005
(682 letters)
>mm_chr3_7272886_7273966
Length = 1081
Score = 1280 bits (662), Expect = 0.0
Identities = 674/678 (99%), Gaps = 1/678 (0%)
Strand = Plus / Plus
Query: 5 gaattctcaactaaagaatctcaaatgcctgagaatcacctaaagaaatgttcaacatcc 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaactgaagaatctcaaatgcctgagaatcacctaaagaaatgttcaacatcc 264
Query: 65 ttagtcttcaggaaattgaaaatcaaaacaaccctgagattccacctcataccagtcaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttagtcttcaggaaattgaaaatcaaaacaaccctgagattccacctcataccagtcaga 324
Query: 125 atggctaagatcaaaagctcaggtgacagcagatgctggtgaggttgtggagaaagaata 184
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atggctaagatcaaaagctcaagtgacagcagatgctggtgaggttgtggagaaagaata 384
Query: 185 acactccttcatttctagtgtgattgcaagctggtacaaccactctggaaatcagtctgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acactccttcatttctagtgtgattgcaagctggtacaaccactctggaaatcagtctgg 444
Query: 245 tggttcctcagaaaatgcgacatagtactacctgaggacccagctataccactcctgggc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tggttcctcagaaaatgcgacatagtactacctgaggacccagctataccactcctgggc 504
Query: 305 atatacccaaaagatgctttgatgtaaaacaaggacacatgctccactatgttcataaca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atatacccaaaagatgctttgatgtaaaacaaggacacatgctccactatgttcataaca 564
Query: 365 gtcttatttataatagccaggagctggaaacaacccagatgcccctcaacaaaggaatgt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtcttatttataatagccaggagctggaaacaacccagatgcccctcaacaaaggaatgt 624
Query: 425 atacagaaaatattgtatatttacacaatggagtactagtcaattactaaaacaatgact 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atacagaaaatattgtatatttacacaatggagtactagtcaattactaaaacaatgact 684
Query: 485 ttgtgaagtaatttactatacaccatttgaataacttccttaacatctgtgttgtatgtc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttgtgaagtaatttactatacaccatttgaataacttccttaacatctgtgttgtatgtc 744
Query: 545 agatttgttccttgcagacttgtgtctgaaaaaatgttgatttacccaccaactactcaa 604
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 745 agatttgttccttgcagacttgtgtctgaaaaa-tgttgatttacccaccaactactcaa 803
Query: 605 ttcacagtggtcaaatacaaggccaatagagctatgccacaccaaaacctcccttatagt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 804 ttcacagtggtcaaatacaaggccaatagagctatgccacaccaaaacctcccttctagt 863
Query: 665 aatttaatcattaatggt 682
||||||||||||||||||
Sbjct: 864 aatttaatcattaatggt 881
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1081
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1071
Effective search space: 719712
Effective search space used: 719712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_d04.g1 MSMg01no517_d04.g1 CHROMAT_FILE:
MSMg01no517_d04.g1 PHD_FILE: MSMg01no517_d04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:12 2005
(445 letters)
>mm_chr3_7444512_7445356
Length = 845
Score = 861 bits (445), Expect = 0.0
Identities = 445/445 (100%)
Strand = Plus / Minus
Query: 1 atttagaagtttgctgcccaacagttacatttttttcgtattcctctgagaagagataaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 atttagaagtttgctgcccaacagttacatttttttcgtattcctctgagaagagataaa 586
Query: 61 aatgtcattttattctacattggatccttgatgtcacatttaaggaagactcagtggtag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 aatgtcattttattctacattggatccttgatgtcacatttaaggaagactcagtggtag 526
Query: 121 ggtgtgaacagtgggctactatgtcagtatttcctgaaaaataaaggtcatgattttctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ggtgtgaacagtgggctactatgtcagtatttcctgaaaaataaaggtcatgattttctg 466
Query: 181 ttatagagcagaaagcatttctgtgaattcaggatgaatatgtactaacataaaatgttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ttatagagcagaaagcatttctgtgaattcaggatgaatatgtactaacataaaatgttc 406
Query: 241 ttagtttaaaaaagttaagctcaacaaattctacagcttctcattcattgttaatgtgtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ttagtttaaaaaagttaagctcaacaaattctacagcttctcattcattgttaatgtgtt 346
Query: 301 aaaatggaaaattttgtgtttctaggttattaaataaaaagcaagaatatttgttcacat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aaaatggaaaattttgtgtttctaggttattaaataaaaagcaagaatatttgttcacat 286
Query: 361 acatagcatgaacatagcatgtaaatttacagtttacatgtcttaaataaattcaaaata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 acatagcatgaacatagcatgtaaatttacagtttacatgtcttaaataaattcaaaata 226
Query: 421 agctataattgagtattaaaacaac 445
|||||||||||||||||||||||||
Sbjct: 225 agctataattgagtattaaaacaac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space: 363225
Effective search space used: 363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
