Query= MSMg01no518_b05.b1 MSMg01no518_b05.b1 CHROMAT_FILE:
MSMg01no518_b05.b1 PHD_FILE: MSMg01no518_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:22 2005
(686 letters)
>mm_chr3_95061433_95062519
Length = 1087
Score = 901 bits (466), Expect = 0.0
Identities = 517/538 (96%), Gaps = 8/538 (1%)
Strand = Plus / Minus
Query: 150 tctctctctctcccttctcccctctccttctttctctcctatctattgatacagggtaaa 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1083 tctctctctctcccttctcccctctccttctttctctcctatctattgatacagggtaaa 1024
Query: 210 attggaaggtggggaataaaggatgggaaaaagaagaatcactgcgaagtagcaaagacc 269
|||||||||||||||||||||||||||||||||||||| |||| | |||| |||||||||
Sbjct: 1023 attggaaggtggggaataaaggatgggaaaaagaagaaccactacaaagtggcaaagacc 964
Query: 270 agctacttgctgtctttttattttattgaggaaccttaggttcagggggttaatatcact 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 agctacttgctgtctttttattttattgaggaaccttaggttcagggggttaatatcact 904
Query: 330 tctgggtcttattcataagaggcaatatagttgagctacttttcaaaacaatgctgtctt 389
||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 903 tctggatcttattcat-------aatatagttgagctacttttcaaaacaatgctgtctt 851
Query: 390 aattgaaagcctgttttctccctattctaccatagtttccagtatgtaagcactatatac 449
|||||||||||||| |||||||||||||| || |||||||||||||||||||||| ||||
Sbjct: 850 aattgaaagcctgtattctccctattctatcacagtttccagtatgtaagcactacatac 791
Query: 450 atttttagtgatgcacaaattatgcgctgcatgctcaaaaaactc-ttagagttcattgg 508
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 790 atttttagtgatgcacaaattatgagctgcatgctcaaaaaactctttagagttcattgg 731
Query: 509 tgataaggacggtctgcctgtaaactttgattgctttctttttcctcccttctaggcctt 568
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 730 tgataaggacggtctgcctgtaaactttgattgctttctttttcttcccttctaggcctt 671
Query: 569 tctgcagcggacagacctcttcacagatctcagtgctttctgccatgatcacagctatga 628
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 670 tctgcagcggacagacctcttcacagatctcagttctttctgccatgatcacagctatga 611
Query: 629 tgccctggttgccatgactatctttttcaacactcacaatgagccagtacggcaatta 686
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 610 tgccctggttgccatgactatctttttcaacactcaaaatgagccagtacggcaatta 553
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1087
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1077
Effective search space: 728052
Effective search space used: 728052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_b05.g1 MSMg01no518_b05.g1 CHROMAT_FILE:
MSMg01no518_b05.g1 PHD_FILE: MSMg01no518_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:23 2005
(610 letters)
>mm_chr3_95035851_95036860
Length = 1010
Score = 1172 bits (606), Expect = 0.0
Identities = 609/610 (99%)
Strand = Plus / Plus
Query: 1 attaccatgtgctgtgaagtggagacaccatctctgatctgccttatgaaaaaacacttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaccatgtgctgtgaagtggagacaccatctctgatctgccttatgaaaaaacacttt 260
Query: 61 ccttacctccctcttgagaggcaggtgtgttcacatgtaataaaggaggctctgtgacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttacctccctcttgagaggcaggtgtgttcacatgtaataaaggaggctctgtgacag 320
Query: 121 aagagacaagtcacctagctgtcaattaggcctgttctgaggtgggcaggggctgtacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagagacaagtcacctagctgtcaattaggcctgttctgaggtgggcaggggctgtacca 380
Query: 181 gcattccctctcacccagaggtgactttgctttgtcctttcgttgtcagcaggccactgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcattccctctcacccagaggtgactttgctttgtcctttcgttgtcagcaggccactgt 440
Query: 241 ccttaccactctggtgacattgtctctggcttatgatcttccatctttgtctttcctacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttaccactctggtgacattgtctctggcttatgatcttccatctttgtctttcctacc 500
Query: 301 ctaatatttgccaaatcagttcatagctcttagtgggttttcaagactccttctccttcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctaatatttgccaaatcagttcatagctcttagtgggttttcaagactccttctccttcc 560
Query: 361 tctgctgtcgggaggagatggctgcatacgcacttgtgactccctgtcttccccaaacag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctgctgtcgggaggagatggctgcatacgcacttgtgactccctgtcttccccaaacag 620
Query: 421 aagaaaaagagaagacggattgaccgcactatgattggggagccaatgaactttgtccac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagaaaaagagaagacggattgaccgcactatgattggggagccaatgaactttgtccac 680
Query: 481 ctgactcacatcggctctggggagatgggggctggagatggacttgccatggtaagaggg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgactcacatcggctctggggagatgggggctggagatggacttgccatggtaagaggg 740
Query: 541 aagggagaaatgtttatttggggtgtattcaagcaagggacctaacagtaacgtagtgag 600
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aagggagagatgtttatttggggtgtattcaagcaagggacctaacagtaacgtagtgag 800
Query: 601 gaaaggagaa 610
||||||||||
Sbjct: 801 gaaaggagaa 810
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space: 600000
Effective search space used: 600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
