GTGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAGGGTTACATAAAGAAACCCTTGTCTCAAAAAACAAAACAA
ACAAAAAAGCTGGGTGTGGAATGAGAGACAGTGGTTAAAAGCACATACCT
GTTCTCTCAGAGTTTGTACCCCAGCACCCATGTCAAGCAGTCACAAAGAC
CTATAATTTCAGCTCCAAAGGATTTGATATCCTTTTCTGGAGGCACTCAC
AGGTAGACAGGCAGACAGACAGACAGATAGACACCCCCCCACACACATAC
ACACCACACACACACTCCACACATGCTAAGGCATAAACACACAAAAACAA
TTTTTAAGCCAATGTGTTTTAACTCAGGGGGTGGGAGAAGGTGATGTCTT
GAGATCCCCAGGCCAAGCAGCCTAGGCAATTAGCTTACCAGGCACTGTGC
TCAATGAGACCCTGTCTCAAAAATTAAAGTGGAGAGTTGGCAAGATGGCT
CAGAGGGTAAAAACACTTGCTCCCAAGCCTGACAGGCTAAATTCAATCCC
TGGAACTCACACAACTCCTGAAAGTTGTCCCCTGACCTCTACAAGCACAC
CATGACATACACATAACCCCCCCCCATACACATAAAATATATGTAATTTA
TAAAATAAGAATTTTAAGATGGAGACCAATTTTATAAGGATACCAGAAGC
CAACCTATGGCTCCACACCCATTCTCACTCACATGCACATATACACATAT
ACN

NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTACAAGCCTGTGCATCT
CTGAATGCATACAAAACGTCCACGTCTAGCCTTACAAGCTCGAAATGCAC
TTGATGCCGTGAGTTACAGCCCCTCTACCTCTACACGGACTGTCTCCAGA
AAGTAGCTCGCTTTTGTGCTCCTCAGTCCCTTCAACCTGAGACAGAAGAG
GACTGTGTGAGGAGATCGTGGCGTGTTTTTGTACTTATAGAAAGAGGGTG
TCTGTCGCTACATCAAAAGAGTTCTTGTGTACTACGACCTGAGAGTGCGG
CGGCTGCCTGGGTTCCAGGGTAGAATTACTGCTCCCAGCCACTTAGCCAC
AAGGGCATTCCCAGAACCCACCCCTGCCAGGCCCCTCCAGGCTTTAATGC
AATCCTTTCTTCCAGGACGTCCGCTCTTCTTGCCTCTTTTTGCTCTTTTA
TGCTGGAAAGGTAATGGGGGTGCTTTGTAAATGGCTCTGAATATTCTTTG
AATCCTTTCAAAATGGTCCAAGATTACAGTAATTGTCCTGTTGATTCATA
GCAGTGGCTGCTTTTTTTTTTTTTTTTTAGTTGCTGCCCTAGAAAAAACA
GCTCCTTTTTTTTTTCTAATTATTTTTAGCCCAAGCTGAAAGTTTGTTTC
TCTGAGGAAAAGAAAAATCAATATGTAACAATGTACCAACTCTATTAAGA
AAAGCTTAT

Query= MSMg01no518_m10.g1 MSMg01no518_m10.g1 CHROMAT_FILE:
MSMg01no518_m10.g1 PHD_FILE: MSMg01no518_m10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:17 2005
         (621 letters)



>mm_chr3_116102307_116103337
          Length = 1031

 Score = 1135 bits (587), Expect = 0.0
 Identities = 616/631 (97%), Gaps = 10/631 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttacaagcctgtgcatctctgaatgcatacaaaacgtccacgtctagccttacaagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttacaagcctgtgcatctctgaatgcatacaaaacgtccacgtctagccttacaagct 260

                                                                       
Query: 61  cgaaatgcacttgatgccgtgagttacagcccctctacctctacacggactgtctccaga 120
           |||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 261 cgaaatgcgcttgatgccgtgagttacagccccactacctctacaaggactgtctccaga 320

                                                                       
Query: 121 aagtagctcgcttttgtgctcctcagtcccttcaacctgagacagaagaggactgtgtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtagctcgcttttgtgctcctcagtcccttcaacctgagacagaagaggactgtgtga 380

                                                                       
Query: 181 ggagatcgtggcgtgtttttgtacttatagaaagagggtgtctgtcgctacatcaaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggagatcgtggcgtgtttttgtacttatagaaagagggtgtctgtcgctacatcaaaaga 440

                                                                       
Query: 241 gttcttgtgtactacgacctgagagtgcggcggctgcctgggttccagggtagaattact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttcttgtgtactacgacctgagagtgcggcggctgcctgggttccagggtagaattact 500

                                                                       
Query: 301 gctcccagccacttagccacaagggcattcccagaacccacccctgccaggcccctccag 360
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctcccagccactcagccacaagggcattcccagaacccacccctgccaggcccctccag 560

                                                                       
Query: 361 gctttaatgcaatcctttcttccaggacgtccgctcttcttgcctctttttgctctttta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctttaatgcaatcctttcttccaggacgtccgctcttcttgcctctttttgctctttta 620

                                                                       
Query: 421 tgctggaaaggtaatgggggtgctttgtaaatggctctgaatattctttgaatcctttca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgctggaaaggtaatgggggtgctttgtaaatggctctgaatattctttgaatcctttca 680

                                                                       
Query: 481 aaatggtccaagattacagtaattgtcctgttgattcatagcagtggctgcttttttttt 540
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 681 aaatggtccaagattacagtaattgtcctgttgattcatagcagcggctgcttttttttt 740

                                                                       
Query: 541 tttttttt---agttgctgccctagaaaaaacagctcc-------ttttttttttctaat 590
           ||||||||   |||||||||||||||||||||||||||       |||||||||||||||
Sbjct: 741 tttttttttttagttgctgccctagaaaaaacagctcccctttttttttttttttctaat 800

                                          
Query: 591 tatttttagcccaagctgaaagtttgtttct 621
           |||||||||||||||||||||||||||||||
Sbjct: 801 tatttttagcccaagctgaaagtttgtttct 831


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1031
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1021
Effective search space:   623831
Effective search space used:   623831
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)