Query= MSMg01no518_p10.b1 MSMg01no518_p10.b1 CHROMAT_FILE:
MSMg01no518_p10.b1 PHD_FILE: MSMg01no518_p10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:32 2005
(708 letters)
>mm_chr3_62576770_62577877
Length = 1108
Score = 878 bits (454), Expect = 0.0
Identities = 529/586 (90%), Gaps = 51/586 (8%)
Strand = Plus / Minus
Query: 5 gaattcatatacaatgatacattaaaatttagtg--------------------atatat 44
|||||||||||||||||||||||||||||||||| ||||||
Sbjct: 555 gaattcatatacaatgatacattaaaatttagtgatatatatatatatatatatatatat 496
Query: 45 atatatatatatatataattttgacatttatacttcagctcttaatatttttcaatctca 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 atatatatatatatataattttgacatttatacttcagctcttaatatttttcaatctca 436
Query: 105 caaggttctaaagatatcaactaaaacacctttgtaataattttcattaattgtcaatat 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 caaggttctaaagatatcaactaaaacacctttgtaataattttcattaattgtcaatat 376
Query: 165 gcacttaaaacctttgaaaaggttataggctactgtacactgttaaccacacccacatta 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gcacttaaaacctttgaaaaggttataggctactgtacactgttaaccacacccacatta 316
Query: 225 tgcttaattagttttgtattaaaaaacaaacaaacaagattttagttgggccatcatgca 284
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 315 cacttaattagttttgtattaaaaaacaaacaaacaagattttagttgggccattatgca 256
Query: 285 tacctttagcctctgcacttggaaggcaggggcagcagatctctatgagttcaaggccag 344
|||||||||||||||||||||| ||||||||
Sbjct: 255 tacctttagcctctgcacttgg------------------------------aaggccag 226
Query: 345 cctgaactacaaaagtgagtttcaggacaaccatgactattacacagacaaaaactgtct 404
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 cctgaactac-aaagtgagtttcaggacaaccatgactattacacagacaaaaactgtct 167
Query: 405 tgaaagccaaccaacaaataaataataagataaaattttaggggaccaaggagatggctc 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 166 tgaaagccaaccaacaaataaataataagataaaattttaggggaccaaggagatggttc 107
Query: 465 agttggtaaagtgctagacacataaagatgaaaacaggggttaagttcctcagcagacat 524
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 106 agttggtaaagtgctagacacataaagatgaaaacaggagttaagttcctcagcagacat 47
Query: 525 ttaaaaagccaagcctagtgtttcatccatatacttccagtggcag 570
|||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 46 ttaaaaagccaagcctagtggttcatccatatacttccagtggcag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1108
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1098
Effective search space: 766404
Effective search space used: 766404
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no518_p10.g1 MSMg01no518_p10.g1 CHROMAT_FILE:
MSMg01no518_p10.g1 PHD_FILE: MSMg01no518_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:32 2005
(671 letters)
>mm_chr3_62398962_62400036
Length = 1075
Score = 1201 bits (621), Expect = 0.0
Identities = 660/675 (97%), Gaps = 4/675 (0%)
Strand = Plus / Plus
Query: 1 aaagcctttcctcttcgctgaatgaaaataaaatttaacagttagaatggttagatagga 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 aaagcctttcctcttcgctgaatgaaaataaaatttaatagttagaatggttagatagga 260
Query: 61 acagcgttggatgcaaattgtgagcacaaacaggcactgcattgacctgataactctgag 120
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagtgttggatgtaaattgtgagcacaaacaggcactgcattgacctgataactctgag 320
Query: 121 ttaagaacaactttgttacttcttgtaatgtatgcaaagacacatggcttacacaattca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaagaacaactttgttacttcttgtaatgtatgcaaagacacatggcttacacaattca 380
Query: 181 attatcttattactctgagcctaatttctctcacctgataaagggcttgaagaaagtcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attatcttattactctgagcctaatttctctcacctgataaagggcttgaagaaagtcca 440
Query: 241 gtcttaaacattcagtcttaaggcaaaataaaagttaacttcaagttaggaatttatcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcttaaacattcagtcttaaggcaaaataaaagttaacttcaagttaggaatttatcaa 500
Query: 301 ttgtatctagttttcttttc----ttttttttttgtcagttttcagattttacaaatttc 356
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 501 ttgtatctagttttcttttcttttttttttttttgtcagttctcagattttacaaatttc 560
Query: 357 tttactttgaaaaggactatgttttctactgctctagaaattgattaaatagcctgcata 416
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttactttggaaaggactatattttctactgctctagaaattgattaaatagcctgcatt 620
Query: 417 ttatgagctgttatgcatatataatcactttaaatctttttatagtatttctgacattta 476
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 621 ttatgagctgttatgcatatataatcactttaaatatttttatagtatttctgacattta 680
Query: 477 tgtatgtaaacgcacacattaaaaataagactatgttctgccatgtagctttttaacttc 536
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 681 tgtatgtaaacgcacgcattaaaaataagaccatgttctgccatgtagctttttaacttc 740
Query: 537 aaaaagacacttccagtgtgtcactgtatggatgagctctgttgaattttccaggtagta 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaaaagacacttccagtgtgtcactgtatggatgagctctgttgaattttccaggtagta 800
Query: 597 caatctggccacaatcctgccacctttctgtctcattttcgaggctatgggtgtgagtca 656
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 801 caatctggccacaatcctgccacctttctgtctcattttcaaggctatgggtgtgagtca 860
Query: 657 cccatacatttctca 671
|||||||||||||||
Sbjct: 861 cccatacatttctca 875
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1075
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1065
Effective search space: 703965
Effective search space used: 703965
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
