Query= MSMg01no519_b22.b1 MSMg01no519_b22.b1 CHROMAT_FILE:
MSMg01no519_b22.b1 PHD_FILE: MSMg01no519_b22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:44 2005
(656 letters)
>mm_chr3_30650768_30651823
Length = 1056
Score = 489 bits (253), Expect = e-142
Identities = 299/329 (90%), Gaps = 24/329 (7%)
Strand = Plus / Minus
Query: 11 ggaattcagatattatagatttagttaagatagaaccttaatctgataggatttgttctc 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ggaattcagatattatagatttagttaagatagaaccttaatctgataggatttgttctc 270
Query: 71 tcttaagatgaggaacagactctggaggacgcttgcatatgcacacagagggccccctgc 130
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 269 tcttaagatgaggagcagactctggaggacgcctgcatatgcacacagagggccccctgc 210
Query: 131 atatgcacaca-----------------------a-aggacaggccatgtgaggacatgg 166
||||||||||| | ||||||||||||||||||||||||
Sbjct: 209 atatgcacacagagggccccctgcatatgcacatagaggacaggccatgtgaggacatgg 150
Query: 167 taaggagatagaatccataagccaggaagtaggactaaccagaagtgaactgggcagtac 226
||||||| |||||||| ||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 149 taaggagttagaatccttaagcgaggaagtaggactcaccagaagtgaactgggcagtac 90
Query: 227 cgtgattttggacttgtattttacagaactgaggaccttttatctttacttaaaaatatg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 cgtgattttggacttgtattttacagaactgaggaccttttatctttacttaaaaatatg 30
Query: 287 tttatggatgtcttacctaatgtatgttt 315
|||||||||||||||||||||||||||||
Sbjct: 29 tttatggatgtcttacctaatgtatgttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_b22.g1 MSMg01no519_b22.g1 CHROMAT_FILE:
MSMg01no519_b22.g1 PHD_FILE: MSMg01no519_b22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:45 2005
(680 letters)
>mm_chr3_30516140_30517223
Length = 1084
Score = 1272 bits (658), Expect = 0.0
Identities = 676/684 (98%), Gaps = 4/684 (0%)
Strand = Plus / Plus
Query: 1 agtattctggagaaaaccagtgctcagatccatttttgtttgagttgaaactatattttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtattctggagaaaaccagtgctcagatccatttttgtttgagttgaaactatattttt 260
Query: 61 ttaaatagatatttggtgtttttaagtggtcagaagacagttttggaatttgattcattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaatagatatttggtgtttttaagtggtcagaagacagttttggaatttgattcattt 320
Query: 121 tatattttattagatttgtagattattggaagtgaatatataacaagttttgaaaatttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatattttattagatttgtagattattggaagtgaatatataacaagttttgaaaatttt 380
Query: 181 tgataagcctatcttgtatcagttatgcactttttaaaataaatgttctaaaaggaattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgataagcctatcttgtatcagttatgcactttttaaaataaatgttctaaaaggaattt 440
Query: 241 tctagatataaaatacatactagaaatcacttggcttctaaatttgatgtattacttaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctagatataaaatacatactagaaatcacttggcttctaaatttgatgtattacttaga 500
Query: 301 aaaatcaagaaacctgagttgcatgcctaaggcaacacacatacacacaaataaa----c 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 aaaatcaagaaacctgagttgcatgcctaaggcaacacacatacacacaaataaatatcc 560
Query: 357 ttaatatcctaacttcaattataagctatacttttgggttatcagtttgtttaccgtttt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 ttaatatcctaacttcaattataagctatacttttgggttatcagtttgtttaccatttt 620
Query: 417 atatttgagttttctatagacatgtgtttttcaaatttataaattaaaactgcaacgttt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atatttgagttttctatagacatgtgtttttcaaatttataaattaaaactgcaacgttt 680
Query: 477 ggttgttggctatagctttatagtgtcctttccgttcccctgggtgtagtgagttcagca 536
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 681 ggttgttggctatagctttatagtgtcctttccgttcccctgggtgtagcgagttcagca 740
Query: 537 tcgcccgtcctccagcctgctccctcttcccctctctctgtctgcatatcagttgatttc 596
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 741 tcgcccgtcctccagcctgctccctcttcccctctcactgtctgcatatcagttgatttc 800
Query: 597 actttgcgttttaagttcagtttcccagtcagttccattgctgataagtcctggtgactg 656
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 actttgcattttaagttcagtttcccagtcagttccattgctgataagtcctggtgactg 860
Query: 657 tttctcatctctgccatcacttag 680
||||||||||||||||||||||||
Sbjct: 861 tttctcatctctgccatcacttag 884
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1084
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1074
Effective search space: 719580
Effective search space used: 719580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
