Query= MSMg01no519_d05.b1 MSMg01no519_d05.b1 CHROMAT_FILE:
MSMg01no519_d05.b1 PHD_FILE: MSMg01no519_d05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:50 2005
(481 letters)
>mm_chr3_157889809_157890690
Length = 882
Score = 878 bits (454), Expect = 0.0
Identities = 475/482 (98%), Gaps = 2/482 (0%)
Strand = Plus / Minus
Query: 1 gaactagaaaatatcatcctgagtgaggtaacccagtcacaaaagactggttttcagtgg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 558 gaactagaaaatatcatcctgagtgaggtaacccagtcacaaaagactggtttttagtgg 499
Query: 61 ggaaaccaggaaaggagatacacatttgaaatgtaaataaagaaaacatctaataatttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ggaaaccaggaaaggagatacacatttgaaatgtaaataaagaaaacatctaataatttt 439
Query: 121 ttaaaaatcactgtggtaatatttgcactctttgaaattatatgcaatgtgccacatgca 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 taaaaaatcactgtggtaatatttgcactctttgaaattatatgcaatgtgccacatgca 379
Query: 181 aacaaaaccttctaaacagtgcacagtacacttctgggttaaatgtaagggctgtg-tat 239
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 378 aacaaaaccttctaaacagtacacagtacacttctgggttaaatgtaagggctgtgttat 319
Query: 240 cttaaaggcttctggttggtcttccagaaatcctgacttcaatccccagcaaccagatgg 299
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cttaaaggc-actggttggtcttccagaaatcctgacttcaatccccagcaaccagatgg 260
Query: 300 agggagccaggactccagataaatatgtagcaaaggatggcctccgctgacattaatggg 359
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 agagagccaggactccagataaatatgtagcaaaggatggcctccgctgacattaatggg 200
Query: 360 aggagagggaggcttgatgtcccttcataggaggatgctagaagagtgaggcagaagtgg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 aggagagggaggcttgatgtcccttcataggaggatgctagaagagtgaggcagaagtgg 140
Query: 420 gttaatgagtgaaggagcaccctcacagaggcaaagggaaggagggagaagtagggtggg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 gttaatgagtgaaggagcaccctcacagaggcaaagggaaggagggagaagtagggtggg 80
Query: 480 at 481
||
Sbjct: 79 at 78
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 882
Length adjustment: 10
Effective length of query: 471
Effective length of database: 872
Effective search space: 410712
Effective search space used: 410712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_d05.g1 MSMg01no519_d05.g1 CHROMAT_FILE:
MSMg01no519_d05.g1 PHD_FILE: MSMg01no519_d05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:51 2005
(629 letters)
>mm_chr3_157748211_157749238
Length = 1028
Score = 1067 bits (552), Expect = 0.0
Identities = 610/630 (96%), Gaps = 5/630 (0%)
Strand = Plus / Plus
Query: 1 ggttactgctgtcacaaaatgtatatttttctctctaacaagtgtttacggtccttggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggttactgctgtcacaaaatgtatatttttctctctaacaagtgtttacggtccttggct 260
Query: 61 ttctttatactgaacagcaaattgtactacttgaattattttcattctgaatttaggggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctttatactgaacagcaaattgtactacttgaattattttcattctgaatttaggggg 320
Query: 121 aggtaggtccatatgcctccgaggattaaaactaaattaaacacaaaatcaatgaaattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtaggtccatatgcctccgaggattaaaactaaattaaacacaaaatcaatgaaattt 380
Query: 181 ggaataaatccccgtcatccaaataactgacagttacataactattttcttgaagggcga 240
||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 381 ggaataaat-cccgtcatccaaataactgacagttaaataactatttccttgaagggcga 439
Query: 241 aatgcattggatttggagtcagttaattggactgcttcacaatgtatatgtagtagaatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aatgcattggatttggagtcagttaattggactgcttcacaatgtatatgtagtagaatc 499
Query: 301 cata-agtttctgtgtgtttatgtgtgtgtgtgcacatgtccgcacacacgtgctcatga 359
|||| | ||||||||||| |||||||||||| |||||| |||||||||||||||||||
Sbjct: 500 cataca-tttctgtgtgtgtatgtgtgtgtgcacacatg--cgcacacacgtgctcatga 556
Query: 360 atgagtgcacgcatgtgagttttgtgtgcatgtgtgtgtttgtgcatacgtacataaatg 419
||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||
Sbjct: 557 atgcgtgcacgcatgtgagttttatgtgcatgtgtgtgtttgtgcatacatacatgaatg 616
Query: 420 tgtgtgtatatgtccgtgtgtgtatgttttgtgtgtatacatgtatgtatgcacacatgt 479
||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 617 tgtgtgtatatgtccatgtgtgtatgttttgtgtgtatacatgcatgtatgcacacgtgt 676
Query: 480 gtgcacatgtgtatacctgagtgtgtatgtgtgtatgtggaggcccagaggatgatatta 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gtgcacatgtgtatacctgagtgtgtatgtgtgtatgtggaggcccagaggatgatatta 736
Query: 540 ggcatcttccttgatagttctccaccttactatttgaggcttggtctctcattgaaccta 599
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ggcatcttccttgatagctcttcaccttactatttgaggcttggtctctcattgaaccta 796
Query: 600 atgcacaccaattcagctatgctgatggtt 629
|||||||||||||||||||||||| |||||
Sbjct: 797 atgcacaccaattcagctatgctgttggtt 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1028
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1018
Effective search space: 630142
Effective search space used: 630142
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
