Query= MSMg01no519_h15.b1 MSMg01no519_h15.b1 CHROMAT_FILE:
MSMg01no519_h15.b1 PHD_FILE: MSMg01no519_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:12 2005
(705 letters)
>mm_chr3_126454601_126455705
Length = 1105
Score = 1156 bits (598), Expect = 0.0
Identities = 622/630 (98%)
Strand = Plus / Minus
Query: 76 cctattgtcccatgatgcacagtgagaacaagcaaagtttattcacacagtaccatgtgc 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1105 cctattgtcccatgatgcacagtgagaacaagcaaagtttattcacacagtaccatgtgc 1046
Query: 136 ccagtatcaagagtcatgctttgcataaggaaattttaacattagtaactcttgaggaaa 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 ccagtatcaagagtcatgctttgcataaggaaattttaacattagtaactcttgaggaaa 986
Query: 196 aaaagcaggaaagattctggcactaggatgaagggccctaaactactatgtaataattct 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 aaaagcaggaaagattctggcactaggatgaagggccctaaactactatgtaataattct 926
Query: 256 ctcaagaatctctgaaacaggattaataaatagaatctcatgaagctaagatgcttctgt 315
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 925 ctcaagaatctctgaaacaggattaataaatagaacctcatgaagctaagatgcttctgt 866
Query: 316 aaagaacattatttttggagcaaagtggcatcctactgaatagaaaataaaacaaaacaa 375
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 865 aaagaacattatttttggagcaaagtggcatcctactgaatagaaaacaaaacaaaaaaa 806
Query: 376 aacaaacaaataaactatcatctctaccagaaaaagaacagaactaaggtaaacaaccac 435
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aacaaacacataaactatcatctctaccagaaaaagaacagaactaaggtaaacaaccac 746
Query: 436 cattaaaaacagacttagtaattacgatgctgagacattatattcacactaacaggatta 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cattaaaaacagacttagtaattacgatgctgagacattatattcacactaacaggatta 686
Query: 496 tgagcatcatttagagccatgaaagacatatttacagtagaagagcatgtacttgaatac 555
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 685 tgagcatcatttagagccatgaaagacatatttacagtagaagagcatgcacttgaatac 626
Query: 556 aagctagtacaggtatgtggctgcacatataagtaagtgtgaattttttataatttataa 615
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 625 aagctagtacaggtatgtggctgcaaatataagtaagtgtgaattttctataatttataa 566
Query: 616 atgcctttctcctcccacatctatgccatttaccatgttatctttgctagaaggcaaatt 675
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atgcctttctcctcccatatctatgccatttaccatgttatctttgctagaaggcaaatt 506
Query: 676 tactgtgacatggccctacttaaaaggttt 705
||||||||||||||||||||||||||||||
Sbjct: 505 tactgtgacatggccctacttaaaaggttt 476
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1105
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1095
Effective search space: 761025
Effective search space used: 761025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no519_h15.g1 MSMg01no519_h15.g1 CHROMAT_FILE:
MSMg01no519_h15.g1 PHD_FILE: MSMg01no519_h15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:12 2005
(672 letters)
>mm_chr3_126314564_126315634
Length = 1071
Score = 1210 bits (626), Expect = 0.0
Identities = 665/686 (96%), Gaps = 15/686 (2%)
Strand = Plus / Plus
Query: 1 ttttcaccctctgagggtgaatcatgaagtggcaggctctgtgggaac----gaaggaag 56
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 187 ttttcaccctctgagagtgaatcatgaagtggcaggctctgtgggaacgaaggaaggaag 246
Query: 57 gaaggaaggaaggtggatcctgagatttatagccctgagtcattaggggtaaacagctga 116
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gaaggaaggaaggttgatcccgagatttatagccctgagtcattaggggtaaacagctga 306
Query: 117 taagagagccacagctaactgcttatcaacccctcattctgttttatgtagccttggggc 176
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 taagagagccacagcaaactgcttatcaacccctcattctgttttatgtagccttggggc 366
Query: 177 aaaatacaaaccccataagagccactaagtaaaaaacaaaggacttgaaaatagagtatt 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aaaatacaaaccccataagagccactaagtaaaaaacaaaggacttgaaaatagagtatt 426
Query: 237 tctttttaaagtcaagtgttatggagtgttaaaaataattaaagtattttttttaaagtc 296
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 427 tctttttaaagtcaagtgttatggagtgttaaaaataattagagtattttttttaaagtc 486
Query: 297 aagtgttatggagtgttactggagattgcagtgtatgttgtgactgttgtgaaaattatt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 aagtgttatggagtgttactggagattgcagtgtatgttgtgactgttgtgaaaattatt 546
Query: 357 ggaggggtctacttaaagccaaaagtgactaggacatctaaccaataggattccactcaa 416
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 547 ggaggggtctacttaaagccaaaagtgactaggacatctaaccaataggatgccactcaa 606
Query: 417 caccagattcttgtgtctaaaagactagcactggtctgtacagttacgtagaggaataaa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 caccagattcttgtgtctaaaagactagcactggtctgtacagttacgtagaggaataaa 666
Query: 477 tgttttgcagagtctgttttcctgtagttttgctaatacatgtttagggacccagagcct 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tgttttgcagagtctgttttcctgtagttttgctaatacatgtttagggacccagagcct 726
Query: 537 ttaatgtcacatctgtgcatactgc----------tgccttcttctctctctctttttaa 586
||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 727 ttaatgtcacatctgtgcatactgcactcaactgctgccttcttctctctctctttttaa 786
Query: 587 gaaactgagagttacacagtttattccacagtgttgaatcacttaaataatgaaaaaaaa 646
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 gaaactgagagttacacagtttattccacagtgttgaatcacttaaataatgaaaaaaa- 845
Query: 647 tcattcattcccttaggtaactttag 672
||||||||||||||||||||||||||
Sbjct: 846 tcattcattcccttaggtaactttag 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1071
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1061
Effective search space: 702382
Effective search space used: 702382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
