Query= MSMg01no519_i23.b1 MSMg01no519_i23.b1 CHROMAT_FILE:
MSMg01no519_i23.b1 PHD_FILE: MSMg01no519_i23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:18 2005
(642 letters)
>mm_chr3_140745500_140746541
Length = 1042
Score = 1218 bits (630), Expect = 0.0
Identities = 636/638 (99%)
Strand = Plus / Plus
Query: 5 gaattcttagggatgttaagtgttaacaaagaagtgaagacttagtggctgtctctactg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttagggatgttaagtgttaacaaagaagtgaagacttagtggctgtctctactg 264
Query: 65 ttgtattgactatcaactgacccttgctacttgacaatgttaatataaacagtaggtaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgtattgactatcaactgacccttgctacttgacaatgttaatataaacagtaggtaaa 324
Query: 125 attctgttcttcctgccatcagagagttcacaatgaatgatgagaggcctagaatgttgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 325 attctgttcttcctgccatcagagagttcacaatgaatgatgagaggcctagaatattgt 384
Query: 185 tcttcttaggaagtctacttaggaaattttcacacatttcaatgataacatttcttttcg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcttcttaggaagtctacttaggaaattttcacacatttcaatgataacatttcttttcg 444
Query: 245 caatgataatttggatagtatacagaaagaggatgttgacctttcctgaagttctgacac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caatgataatttggatagtatacagaaagaggatgttgacctttcctgaagttctgacac 504
Query: 305 atgcttcttccagtatcttctgtccatctatttcccctggattaccatccttaaacactc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgcttcttccagtatcttctgtccatctatttcccctggattaccatccttaaacactc 564
Query: 365 ctactctgtgaaattatatgtgctttaagattcatgtatttttcatagtgccataattgg 424
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 565 ctactctgtgaaattatatgtgctttaagattcatgtatttttcatagtaccataattgg 624
Query: 425 gttttaataaagattgtgtctcatttgatgtgttggagagatttgaacttggtgtgacca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gttttaataaagattgtgtctcatttgatgtgttggagagatttgaacttggtgtgacca 684
Query: 485 catagtgacagtatggttttttagggttactggggaaatgtctctagaaaagatcacaga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 catagtgacagtatggttttttagggttactggggaaatgtctctagaaaagatcacaga 744
Query: 545 taattaataccacagataatataatctttcatatgctgctgatatcagtaatgagatcct 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 taattaataccacagataatataatctttcatatgctgctgatatcagtaatgagatcct 804
Query: 605 cacaagaactgacctcatatcaaagaaatgattctgag 642
||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cacaagaactgacctcatatcaaagaaatgattctgag 842
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space: 652224
Effective search space used: 652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_i23.g1 MSMg01no519_i23.g1 CHROMAT_FILE:
MSMg01no519_i23.g1 PHD_FILE: MSMg01no519_i23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:18 2005
(658 letters)
>mm_chr3_140907709_140908766
Length = 1058
Score = 1222 bits (632), Expect = 0.0
Identities = 653/660 (98%), Gaps = 4/660 (0%)
Strand = Plus / Minus
Query: 1 aaaagttattcaatgtgactaaaattaatatttaaaattatgaaagaattattaacaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 aaaagttattcaatgtgactaaaattaatatttaaaattatgaaagaattattaacaaat 862
Query: 61 taagaaaccattagggagtccttttgttaggctatctcttttcttatttacctagaactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 taagaaaccattagggagtccttttgttaggctatctcttttcttatttacctagaactt 802
Query: 121 tgtttaaatacttaaattcttaatgttcctaagagtttttaaaactactacttattagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 801 tgtttaaatacttaaattcttaatgttcctaagagtttttaaaactactactt-gtagtt 743
Query: 181 tctgaatgctaaatgtcagtggagcctacag-tgaacatgcacaagggaaattatctttc 239
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 742 tctgaatgctaaatgtcagtggagcctacagctgaacatgcacaagggaaattatctttc 683
Query: 240 ttggagagctcaagatcatatgcagttggaatagttgtcatattggacgtgaaataccag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ttggagagctcaagatcatatgcagttggaatagttgtcatattggacgtgaaataccag 623
Query: 300 taaaaccttcgactaacctcctcctgatatgagtgctgagaattgctaatcagttagatg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 taaaaccttcgactaacctcctcctgatatgagtgctgagaattgctaatcagttagatg 563
Query: 360 tcagtgagctttgggtttct-aggtctattcagatcaggaccaaagaagatggttgggat 418
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 562 tcagtgagctttgggtttctca-gtctattcagatcaggaccaaagaagatggttgggat 504
Query: 419 tgttaaaaagagtctaaaataagaacttgttaatgggagctgtcaagaaaacactgctag 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cgttaaaaagagtctaaaataagaacttgttaatgggagctgtcaagaaaacactgctag 444
Query: 479 catgttatactacagatgaagtgcctaaatacatcagggttgcctccggctttgtccaca 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 catgttatactacagatgaagtgcctaaatacatcagggttgcctccggctttgtccaca 384
Query: 539 atgtaactagtacttagagagatccacttcctattgtcgtatgagatgtttggtgaagca 598
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 383 atgtaactagtacttagagagatccacttcctattgtcctatgagatgtttggtgaagca 324
Query: 599 tgttttgtatttcatctttcttgcccactttccatttttagcctttgatccacattctgt 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgttttgtatttcatctttcttgcccactttccatttttagcctttgatccacattctgt 264
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
