Query= MSMg01no519_m13.b1 MSMg01no519_m13.b1 CHROMAT_FILE:
MSMg01no519_m13.b1 PHD_FILE: MSMg01no519_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:36 2005
(704 letters)
>mm_chr3_6525866_6526969
Length = 1104
Score = 1323 bits (684), Expect = 0.0
Identities = 696/700 (99%)
Strand = Plus / Minus
Query: 5 gaattcagtatctctatgctatgatgaaactaaaagggggcttgggttgaaatgttgtat 64
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gaattaagtatctctatgctatgatgaaactaaaagggggcttgggttgaaatgttgtat 744
Query: 65 ctaagcattaaaacaatcaggaaaggacagtgacagcagctcagatttgcaatgtttttt 124
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ccaagcattaaaacaatcaggaaaggacagtgacagcagctcagatttgcaatgtttttt 684
Query: 125 ttttagtagctgcctactaacaattaatttggtctgtaatctaaaacatattataattaa 184
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 683 ttttagtagctgcctactaacaattaatttggtctgtaatctaaaacacattataattaa 624
Query: 185 tttctcaatatttaccaagtacaagtcattactttaatgtgctatgtcattaataaaatc 244
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 623 tttctcaatatttaccaagtacaagtcattactttaatatgctatgtcattaataaaatc 564
Query: 245 ctgttattatttttttctcataaagaatagccagactgatctacatttttccatgctgcc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctgttattatttttttctcataaagaatagccagactgatctacatttttccatgctgcc 504
Query: 305 aaggcagaatggactcaagggatattatcttattcagaaagaacctttcaaggttgaata 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aaggcagaatggactcaagggatattatcttattcagaaagaacctttcaaggttgaata 444
Query: 365 aaagaaatggtacagggtccctgggagcgggaggtgatcatcattttcaccttcaactcc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aaagaaatggtacagggtccctgggagcgggaggtgatcatcattttcaccttcaactcc 384
Query: 425 tgtttgatgtggcagagtcaatttttaatcagcagccatcagactgggcttcatttcgcc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgtttgatgtggcagagtcaatttttaatcagcagccatcagactgggcttcatttcgcc 324
Query: 485 ttacaaagtcctattaccctgcgctctctggaaggaggtgataaggacacagctttgcct 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttacaaagtcctattaccctgcgctctctggaaggaggtgataaggacacagctttgcct 264
Query: 545 tttcacttcatagagccctgcatatgatgagtctctttggagagacttgatgaaaaaact 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tttcacttcatagagccctgcatatgatgagtctctttggagagacttgatgaaaaaact 204
Query: 605 aaaataaataataaaataaaataaaaagaatatatggggataaaggtcacctctctgtca 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 aaaataaataataaaataaaataaaaagaatatatggggataaaggtcacctctctgtca 144
Query: 665 caattaagtcttccacacaacaaacttggatttctctgtg 704
||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 caattaagtcttccacacaacaaacttggatttctctgtg 104
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1104
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1094
Effective search space: 759236
Effective search space used: 759236
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no519_m13.g1 MSMg01no519_m13.g1 CHROMAT_FILE:
MSMg01no519_m13.g1 PHD_FILE: MSMg01no519_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:36 2005
(597 letters)
>mm_chr3_6427305_6428299
Length = 995
Score = 868 bits (449), Expect = 0.0
Identities = 531/597 (88%), Gaps = 62/597 (10%)
Strand = Plus / Plus
Query: 1 caatagccatgtccaccagcacatacattcttttgtcaaagaaactacaactgagaagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatagccatgtccaccagcacatacattcttttgtcaaagaaactacaactgagaagac 260
Query: 61 attttcaaaaagttatttctcattatataaaatattcatacactcaaaatcagccttcat 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttcaaaaagttatttctcataatataaaatattcatacactcaaaatcagccttcat 320
Query: 121 aatactatttattagttgtttttttattttataaaaagtctaagtgtttactagtgagaa 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 aatactatttattagttgtttttttattttataaaaagtctaagtgtttactagggagaa 380
Query: 181 ataataacaattttatcactaaagttcttccaacttttgcatcttttactttccactcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataataacaattttatcactaaagttcttccaacttttgcatcttttactttccactc-- 438
Query: 241 tttccattagagggactaaaatttgccccagtttttccttccttccttccttccttcctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tttccattagagggactaaaatttgccccagtttttccttccttccttccttccttcctt 498
Query: 301 ccttccttccttccttccttccttcctttctttctttccttctttctttctttctttctt 360
|||||||||||||||| ||||||||||||||||||||
Sbjct: 499 ccttccttccttcctt------------------------tctttctttctttctttctt 534
Query: 361 tctttctttctttctttctttctttctttctttctttctttttctgtacattttttgaga 420
| |||||||||||||||||||||||
Sbjct: 535 -c-----------------------------------ctttttctgtacattttttgaga 558
Query: 421 ttgcaatttaattacatttctctattccttttcctttctccaaatccttcccagtctcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 559 ttgcaatttaattacatttctctattccttttcctttctccaaatccttcccactctcat 618
Query: 481 taaaatgtacatagcaccgtatctaataggaaatattgccagtgctcacaatgaagacag 540
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 taaaatgtacacagcaccgtatctaataggaaatattgccagtgctcacaatgaagacag 678
Query: 541 tacactattgagaatgccctaatggaaggcaagaaaggcttgagcactttatgtccc 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tacactattgagaatgccctaatggaaggcaagaaaggcttgagcactttatgtccc 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 995
Length adjustment: 10
Effective length of query: 587
Effective length of database: 985
Effective search space: 578195
Effective search space used: 578195
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
