Query= MSMg01no521_d01.b1 MSMg01no521_d01.b1 CHROMAT_FILE:
MSMg01no521_d01.b1 PHD_FILE: MSMg01no521_d01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:27 2005
(696 letters)
>mm_chr3_43676379_43677477
Length = 1099
Score = 1255 bits (649), Expect = 0.0
Identities = 680/691 (98%), Gaps = 5/691 (0%)
Strand = Plus / Minus
Query: 11 acacacatacacacacataaacacacacacacacacacaca-caccaccaccaccaccac 69
||||||| ||||||||| | ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 707 acacacacacacacacacacacacacacacacacacacacaccaccaccaccaccaccac 648
Query: 70 caccaccaccaccatcaccaccaccaccacgactaccactactaccactagcaaaactaa 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 caccaccaccaccatcaccaccaccaccacgactaccactactaccactagcaaaactaa 588
Query: 130 taaatatcccattaatttttctgatgctcttgaacatattcatatttgtaattcagaatg 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 taaatatcccattaatttttctgatgctcttgaacatattcatatttgtaattcagaatg 528
Query: 190 ttcctcatgaacatgcttttgcagaattccattttccttctgctttccttgacatgaatt 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ttcctcatgaacatgcttttgcagaattccattttccttctgctttccttgacatgaatt 468
Query: 250 acctgtgatgtacatgcattttctgtttgataaactaa-tatttttttcagaatcgtttc 308
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 467 acctgtgatgtacatgcattttctgtttgataaactaattttttttttcagaatcgtttc 408
Query: 309 agtattatacatttagtgttacttctttcacataaagtgaatactca--ttttttttgtg 366
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 407 agtattatacatttagtgttacttctttcacataaagtgaatactcattttttttttgtg 348
Query: 367 acactggatatttcttctatttttgaagttaataacttttattcatatgatgtaaatgtc 426
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gcactggatatttcttctatttttgaagttaataacttttattcatatgatgtaaatgtc 288
Query: 427 tcagaggcttgctgctgaataaacttactctttctagttctttctgaactctggctggct 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tcagaggcttgctgctgaataaacttactctttctagttctttctgaactctggctggct 228
Query: 487 gtttcaaataagttgttctggcccaaattctctctatgttgactgattcaaattggcttc 546
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 227 gtttcaaataagttgttctggcccaaattctctctatgttgactgatttaaattggcttc 168
Query: 547 tctgtgcctctcactgaattgctcttcttggcctcaaactaatctgatctctctatata- 605
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 tctgtgcctctcactgaattgctcttcttggcctcaaactaatctgatctctctatatat 108
Query: 606 ttttttctaatcttcaggctccttcttatactctggcaacaactaactctgctgagctat 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 ttttttctaatcttcaggctccttcttatactctggcaacaactaactctgctgagctat 48
Query: 666 acttaccagaattaaattatgaatgaactca 696
|||||||||||||||||||||||||||||||
Sbjct: 47 acttaccagaattaaattatgaatgaactca 17
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 9
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1099
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1089
Effective search space: 747054
Effective search space used: 747054
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_d01.g1 MSMg01no521_d01.g1 CHROMAT_FILE:
MSMg01no521_d01.g1 PHD_FILE: MSMg01no521_d01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:27 2005
(659 letters)
>mm_chr3_43550945_43552005
Length = 1061
Score = 1266 bits (655), Expect = 0.0
Identities = 659/661 (99%), Gaps = 2/661 (0%)
Strand = Plus / Plus
Query: 1 cataaacagagaagtagaccacttctaagaaatagcttaaataggttaaataattttata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataaacagagaagtagaccacttctaagaaatagcttaaataggttaaataattttata 260
Query: 61 tatgttgtttttgacaggctcttgatttggagtgtaaagtatattgctacaatataaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgttgtttttgacaggctcttgatttggagtgtaaagtatattgctacaatataaata 320
Query: 121 aactaaaatcattaatacactatgtctgaaaatataaatatatttacataagcctataaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactaaaatcattaatacactatgtctgaaaatataaatatatttacataagcctataaa 380
Query: 181 ctttttgaaactgaaagaaatgtcatgggtttcagagagagagagagag--ctcacagta 238
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 ctttttgaaactgaaagaaatgtcatgggtttcagagagagagagagagagctcacagta 440
Query: 239 ggaaaaaatggaagcaagactaaggagatggaatgagtgcaaacgaggtacatattgaca 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaaaaaatggaagcaagactaaggagatggaatgagtgcaaacgaggtacatattgaca 500
Query: 299 tgaaatacaagagaagactgcaaaagtagaagaaaagtaatgttgaagacatctataagc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaaatacaagagaagactgcaaaagtagaagaaaagtaatgttgaagacatctataagc 560
Query: 359 taatggtcaccatttaaagagagaaactcactgaatggactgtgaggattgacaatttgg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taatggtcaccatttaaagagagaaactcactgaatggactgtgaggattgacaatttgg 620
Query: 419 atagaaaatattattggatttttttagaagtttctggagtttgatcggcagtaaaccaaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atagaaaatattattggatttttttagaagtttctggagtttgatcggcagtaaaccaaa 680
Query: 479 taagtaacagagttgttcctgaactataaaatcaatttgttttattagaatatactactg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taagtaacagagttgttcctgaactataaaatcaatttgttttattagaatatactactg 740
Query: 539 gatgggggcattgttagatataatgcagagggataaataagcagtaagagtgggtgatga 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gatgggggcattgttagatataatgcagagggataaataagcagtaagagtgggtgatga 800
Query: 599 aggaattataaaaggggactttctttttcctccccacaaaaggggactttctatgaagtc 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aggaattataaaaggggactttctttttcctccccacaaaaggggactttctatgaagtc 860
Query: 659 a 659
|
Sbjct: 861 a 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1061
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1051
Effective search space: 682099
Effective search space used: 682099
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
