BAC Information

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BAC

Clone NameMSMg01-521G17
Chromosome3 (Build37)
Map Location 75,787,798 - 75,788,109
singlet/doubletsinglet
Overlap genenone
Upstream geneBC050789, Serpini2, Wdr49, Pdcd10, Serpini1, Golph4
Downstream geneFstl5, LOC100041625, LOC100041635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521G17.T7 (MSMg01no521_g17.b1)MSMg01-521G17.TJ (MSMg01no521_g17.g1)
ACCAG592219AG592220
length748759
length of high quality
(start - end)		603 (51 - 653)629 (75 - 703)
definitionCHROMAT_FILE: MSMg01no521_g17.b1 PHD_FILE: MSMg01no521_g17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:45 2005CHROMAT_FILE: MSMg01no521_g17.g1 PHD_FILE: MSMg01no521_g17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGTGATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTATACAAGCTTGAGGCAGAAGATGCTTGATATAAGCAT
TACTATTCTATATTTAGACTGAGACAAGATATGAGGGCAGAAAAATAAGC
ATTTCAATAACACACACATAACCTTTACATGATGCACAAAAACATTTTGC
CTACAGGACTTGAACTATATCATTAGTGCTTTTAGTTGTCCCTCTTTGAG
ACTTGAAGCCTTGGATCCTTCAGCCACCATAACCATGCATATAATCTCTT
ATATTAAATTTATTTCTGTGAAAAAGTTATTTGCATACCCTCTTAGTTCT
TTTCTCTGGAGAAATGTGTTGGCTCTGAGGATTTAGGCAATAGTTCTCTC
TTTGTTCTAAATATGTTTATCCAAAATTCTCTTGTTGAAAGTTAATTGTT
AATGTGACCATTTTAAGAGTTGAGGCCCTTTGGTGGATGATTAAGTCACA
GTGATTCTCATGGTGAATGAATATTACTGCCATTATTATAAAAAAAAAAA
GAAAACTTAAGAGAGCACATTTGTCTTTCCCACCACATAAGGATGTAGCA
GGAAAAAATATGTCACCTTTGAAGCAGCGAACAAGTCCATGACAGAATGG
AATTTCTTGGTGCCTTGATTTTGTATTTTTCAGGCTACAAAGATGTTAGA
AATGTTTGTAGTCTTTATAAATTTCCCACTAATGGCTTAGTCNGCCAT

ACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACACCCCTAAGTCCCTTACCCCATA
AAAACCCCTAGCTTTTGAGCCTCGTGGCCGACATCCGTTATCTCCTGTGT
GGGATGCATGTTGGTCCGGAGCTATGTAATTAAACGACCTCATGTAATTA
CATCGAGATGGTCCTTCGTGATTTTTTTGGGTGCACGCCAAATCGGGAAT
GGAGTGGGGGTTTCCCCACTAGGTCTATCACTAGAATTCAATGAAAATGA
ATGCATAGAATACTCGGACTTAATGAAAGTGACTTCATAAAGAGAGATCT
CCTAAAGAGATCTTCATAGAGAGATCTTATGCTAGCAACTTAATAGCACA
CCTATAAGCTCAAGAGCCAAAAGAAGCAAACACATCTCAGAAGACTGGAG
GGTAAGAAAAATGAAATGGGGGACTGAAATCAATAAAATAGAAACAAAGA
AAACAATACAAAGAATCAAGTAAATAAAGAGTTGATTCTTTCAGAAAATC
AACAAGAGAAATTAATCCTTATTGAAACTAAATAAAGTCAAAGAGAGAAT
ATTCAAATTAATAAAATTAAAATCAAAAAGTGGGACATAACAATAGACAC
TGAGGAAATCCAAGAAATCATTAGAACATACTTTCAAAAACTTGTATGCC
TCANAATTGTAAAATCTAAAAGAGATTAATATTATTGATAGATACCACTT
ACCNAAGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_g17.b1 MSMg01no521_g17.b1 CHROMAT_FILE:
MSMg01no521_g17.b1 PHD_FILE: MSMg01no521_g17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:45 2005
         (603 letters)



>mm_chr3_75787105_75788109
          Length = 1005

 Score =  507 bits (262), Expect = e-147
 Identities = 299/312 (95%), Gaps = 4/312 (1%)
 Strand = Plus / Minus

                                                                        
Query: 296  gttcttttctctggagaaatgtgttggctctgaggatttaggcaatagttctctctttgt 355
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 gttcttttctctggagaaatgtgttggctctgaggatttaggcaatagttctctctttgt 946

                                                                        
Query: 356  tctaaatatgtttatccaaaattctcttgttgaaagttaattgttaatgtgaccatttta 415
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945  tctaaatatgtttatccaaaattctcttgttgaaagttaattgttaatgtgaccatttta 886

                                                                        
Query: 416  agagttgaggccctttggtggatgattaagtcacagtgattctcatggtgaatgaatatt 475
            |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 885  agagttgaggccctttggtggatgattaagtcatggtgattctcatggtgaatgaatatt 826

                                                                        
Query: 476  actgccattattataaa-a-aaaaaaagaaaacttaagagagcacatttgtctttcccac 533
            |||| |||||||||| | | |||||||||||||||||||||||||||||||| |||||||
Sbjct: 825  actggcattattatatatataaaaaaagaaaacttaagagagcacatttgtccttcccac 766

                                                                        
Query: 534  cacataaggatgtagcaggaaaaaa--tatgtcacctttgaagcagcgaacaagtccatg 591
            |||||||||||||||||| ||||||  |||||||||||||||| || ||||||| |||||
Sbjct: 765  cacataaggatgtagcagaaaaaaaaatatgtcacctttgaagtagtgaacaaggccatg 706

                        
Query: 592  acagaatggaat 603
            ||||||||||||
Sbjct: 705  acagaatggaat 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1005
Length adjustment: 10
Effective length of query: 593
Effective length of database: 995
Effective search space:   590035
Effective search space used:   590035
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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