BAC Information

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BAC

Clone NameMSMg01-521I11
Chromosome3 (Build37)
Map Location 138,734,396 - 138,735,003
singlet/doubletsinglet
Overlap geneRap1gds1
Upstream geneMttp, Rg9mtd2, 4930579F01Rik, Adh7, Adh1, Adh6a, LOC639769, Adh4, Adh5, Metap1, EG383925, EG668879, Eif4e, EG545570, LOC668881, LOC668882, Ppia-ps3_1437.1, Tspan5, LOC620771
Downstream geneEG229879, B930007M17Rik, LOC100039840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521I11.T7 (MSMg01no521_i11.b1)MSMg01-521I11.TJ (MSMg01no521_i11.g1)
ACCAG592303AG592304
length740751
length of high quality
(start - end)
610 (52 - 661)591 (78 - 668)
definitionCHROMAT_FILE: MSMg01no521_i11.b1 PHD_FILE: MSMg01no521_i11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:53 2005CHROMAT_FILE: MSMg01no521_i11.g1 PHD_FILE: MSMg01no521_i11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTCCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTAATTTCCACTCCTGTATAAATAAATGCACCAAGCAA
ATTCCATTCCTCTGCAGTATGAATACAGTCCCTATCTCAGCCCTAGTAGA
GCTAGCAAACTGACCCAAACACTTAAGCTGCTTTGTTAAGAAGAAACTGC
CATTTGAAAACTAAAGAAAAACACCATGCAGAGACAGAACGAATATAAGC
CATCTGAGATACTGGGCACATTTCAAACCTGAATTTCAAATATCGTAAAA
TTTATAATCAAAACAGACTTTGGTTTAGATGATTTTGCTCTCTCTAAAAC
TAATGTTAAACCAGAATCTCCAATAGAAGATACCACAGGGGTTTAAAAAC
AAACAAACTATACTATGCTACAACATAGACATAAGAGAAGGGAATGTCGA
AGAAGTGTGAGGGACTACTGTGAAATTACCATTATGGTCAGGTAAGAGAA
CAGCAACCTTCTGCCCCATGAATACATTTAATGGTTGACTCCCTCAACAA
GTGCAAACTTCAGCCCGGCATTTCAGACCTACCACTATTTGGTGACTGGT
AATACGTTTTCACTTCTGTCTCCCAACGTTTCTGTATTTTTCTCTAGCTA
AACAAGGCCTTTTATAAACTTTTCTAGAAACATCTCTAACCTTTCCTATC
TATTTTCATCTTACCCCATACCCCTCCTTCCAGCAGTCTC
CCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAACCAGACCTTCAAAAAAGACCT
AATACCAAAAATCCTCAAACTATTCCATAAAATAGGAACAGAAGGAACAC
TACCTAATTAAGTCTATGAAGCTACAATTTCTCTGATACCTAAACCACAC
AAGGACCCAACCAAAAAAAGAGAACTTCAGACCAATCCTGTTTATGAATA
TCAATTCAAAAGTACTCAATAAAATTCTTGCAAACCACATTCAAGAACAC
ATCAAAATCATCATTCAAACTATCAAGTAGGCTTCATCCCAGGGATGCAA
GGTTGGTTCAACATTTGAAATTAATTAACATAATCACTACATAAACAAAC
TCAAAGAATAAAATCACATGTTCGTCTCCTTAGATGCAGAAAAAGCATTT
GACAAAATACAATACCCCTTTCATGTTAAAAGTATTGGAGAGATCAAGAA
TTCAAGGCGGATACATAAACATAATAAAAGCAATACCCAGAAAACGAACA
GCCAATATCAAATTAAATGGAGAGATACTTGAAGCAATCCCACTAAAATC
AGAGACAAGGATGACTACTCTCCCATATCTATTCAATATAGCACTCAAAG
TGCTAGCTAGAACAATAAGACAACTAAAAGAGATCTAGGGGATACAAACT
GGCACAGAAGAAAAAAGGTATCACTATTTGCAGATGAGACGATAGTATAT
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_i11.b1 MSMg01no521_i11.b1 CHROMAT_FILE:
MSMg01no521_i11.b1 PHD_FILE: MSMg01no521_i11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:53 2005
         (610 letters)



>mm_chr3_138734193_138735203
          Length = 1011

 Score = 1106 bits (572), Expect = 0.0
 Identities = 599/608 (98%), Gaps = 1/608 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttaatttccactcctgtataaataaatgcaccaagcaaattccattcctctg 63
           |||||||||||| |  || ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 204 ggaattctttaagtaacaatcctgtataaataaatgtaccaagcaaattccattcctctg 263

                                                                       
Query: 64  cagtatgaatacagtccctatctcagccctagtagagctagcaaactgacccaaacactt 123
           |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 264 cagtctgaatacagtccctatctcagccctagtatagctagcaaactgacccaaacactt 323

                                                                       
Query: 124 aagctgctttgttaagaa-gaaactgccatttgaaaactaaagaaaaacaccatgcagag 182
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagctgctttgttaagaaagaaactgccatttgaaaactaaagaaaaacaccatgcagag 383

                                                                       
Query: 183 acagaacgaatataagccatctgagatactgggcacatttcaaacctgaatttcaaatat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acagaacgaatataagccatctgagatactgggcacatttcaaacctgaatttcaaatat 443

                                                                       
Query: 243 cgtaaaatttataatcaaaacagactttggtttagatgattttgctctctctaaaactaa 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cgtaaaatttataatcaaaacagactttggtttagatgattttgctctctctaaaactaa 503

                                                                       
Query: 303 tgttaaaccagaatctccaatagaagataccacaggggtttaaaaacaaacaaactatac 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgttaaaccagaatctccaatagaagataccacaggggtttaaaaacaaacaaactatac 563

                                                                       
Query: 363 tatgctacaacatagacataagagaagggaatgtcgaagaagtgtgagggactactgtga 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tatgctacaacatagacataagagaagggaatgtcgaagaagtgtgagggactactgtga 623

                                                                       
Query: 423 aattaccattatggtcaggtaagagaacagcaaccttctgccccatgaatacatttaatg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aattaccattatggtcaggtaagagaacagcaaccttctgccccatgaatacatttaatg 683

                                                                       
Query: 483 gttgactccctcaacaagtgcaaacttcagcccggcatttcagacctaccactatttggt 542
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 684 gttgactccctcaacaagtgcaaacttcagcccagcatttcagacctaccactatttggt 743

                                                                       
Query: 543 gactggtaatacgttttcacttctgtctcccaacgtttctgtatttttctctagctaaac 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gactggtaatacgttttcacttctgtctcccaacgtttctgtatttttctctagctaaac 803

                   
Query: 603 aaggcctt 610
           ||||||||
Sbjct: 804 aaggcctt 811


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1011
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1001
Effective search space:   600600
Effective search space used:   600600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)