Query= MSMg01no521_j03.b1 MSMg01no521_j03.b1 CHROMAT_FILE:
MSMg01no521_j03.b1 PHD_FILE: MSMg01no521_j03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:56 2005
(612 letters)
>mm_chr3_99093797_99094808
Length = 1012
Score = 1137 bits (588), Expect = 0.0
Identities = 603/608 (99%)
Strand = Plus / Minus
Query: 5 gaattcttagattaatcctacattagtttctgtagagttctgtgcaagcaactactacat 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 gaattcttagactaatcctacattagtttctgtagagttctgtgcaagcaactactacat 753
Query: 65 gtgggtcccctcaacaggaagcagggacaaccttctgctgaggagtaagagtgacttgtg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 gtgggtcccctcaacaggaagcagggacaaccttctgctgaggagtaagagtgacttgtg 693
Query: 125 tgcccaagcgtcacccagctggagaaaggccactggaggggtttgggtaacaataataac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 tgcccaagcgtcacccagctggagaaaggccactggaggggtttgggtaacaataataac 633
Query: 185 agctgttggctccctgcccagagcagatctgttgaatcctgggccggggccctccccctc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 agctgttggctccctgcccagagcagatctgttgaatcctgggccggggccctccccctc 573
Query: 245 ctgctggcaaggcctccacactctccttggcaggcattaaagttcacctgctcaagccgc 304
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ctgctggcaaggcctccacgctctccttggcaggcattaaagttcacctgctcaagccgc 513
Query: 305 aggtgctattttctgccttgcctcatggcctgagctgagtcccactatggtccctaagca 364
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 512 aggtgctattttctgccttgcctcatggcgtgagctgagtcccactatggtccctaagca 453
Query: 365 caggtaggaaaacacgaaggttaacatgaccctaggctgaattatgctcccatacttgac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 caggtaggaaaacacgaaggttaacatgaccctaggctgaattatgctcccatacttgac 393
Query: 425 aaactacactgtaccgtgaataaggctccctacttttcaggtcagtgcccagagtcccta 484
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 aaactgcactgtactgtgaataaggctccctacttttcaggtcagtgcccagagtcccta 333
Query: 485 taagggcctgactcaccctccatacctataaccttgacctataaccttgacctaggttat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 taagggcctgactcaccctccatacctataaccttgacctataaccttgacctaggttat 273
Query: 545 gactcttgcttcttccttctatgctgcaagtgtgaaaaggcccagaatctaccagtgtta 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gactcttgcttcttccttctatgctgcaagtgtgaaaaggcccagaatctaccagtgtta 213
Query: 605 gaaagcag 612
||||||||
Sbjct: 212 gaaagcag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_j03.g1 MSMg01no521_j03.g1 CHROMAT_FILE:
MSMg01no521_j03.g1 PHD_FILE: MSMg01no521_j03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:56 2005
(480 letters)
>mm_chr3_98961898_98962777
Length = 880
Score = 913 bits (472), Expect = 0.0
Identities = 479/482 (99%), Gaps = 2/482 (0%)
Strand = Plus / Plus
Query: 1 gccatcagaaggcatgtgcagtgcttctaggttttgtactctgtccatgttctccaggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gccatcagaaggcatgtgcagtgcttctaggttttgtactctgtccatgttctccaggag 260
Query: 61 gtccatggcctcatctcctcatcggggaggactctcctctctaagaatcttctgtgcttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtccatggcctcatctcctcatcggggaggactctcctctctaagaatcttctgtgcttc 320
Query: 121 tctgccttttgatttctctatgctgggaacaagaagcagttcttcaggattatgtctaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgccttttgatttctctatgctgggaacaagaagcagttcttcaggattatgtctaac 380
Query: 181 aaataaaatctcttctatggtcaagctagactcttaggattcttagagaccgtgcgtgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaataaaatctcttctatggtcaagctagactcttaggattcttagagaccgtgcgtgtg 440
Query: 241 tgcgtgtgcacatgcatgtggggaggtacgtgggggtatgtatgccctgcactgataagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcgtgtgcacatgcatgtggggaggtacgtgggggtatgtatgccctgcactgataagg 500
Query: 301 actttggttgtctacctctgttgttctccatctttttattttttaagttttttttttttt 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 actttggttgtctacctctgttgttctacatctttttattttttaagttttttttttttt 560
Query: 361 ttt--acattttgaaattaaaatgatatcatgtccccttttccctttcctccttctaacc 418
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttttacattttgaaattaaaatgatatcatgtccccttttccctttcctccttctaacc 620
Query: 419 cttcccttgtacccgccccccatgctctataaaattcatggcttgtttttctttgtgagt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttcccttgtacccgccccccatgctctataaaattcatggcttgtttttctttgtgagt 680
Query: 479 gt 480
||
Sbjct: 681 gt 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
