Query= MSMg01no521_l01.b1 MSMg01no521_l01.b1 CHROMAT_FILE:
MSMg01no521_l01.b1 PHD_FILE: MSMg01no521_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:06 2005
(695 letters)
>mm_chr3_34297857_34298951
Length = 1095
Score = 1249 bits (646), Expect = 0.0
Identities = 682/698 (97%), Gaps = 7/698 (1%)
Strand = Plus / Plus
Query: 5 gaattccatgcaatgtattttttatcatattcatctccaactcctccctttgagttctcc 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gaattccatgcaatgcattttttatcatattcatctccaactcctccctttgagttctcc 257
Query: 65 cagactcaccccacctccctacacctctaacttcttgggattgtt-------gcttttca 117
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 258 cagactcaccccacctccctacacctctaacttcttgggattgtttgttgttgcttttca 317
Query: 118 ataacttgttgattctaacgtgttctgtctatattctctttagtgttgaaccacatggtt 177
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 318 ataacttgttgattctaacgtgttctgtctatatactctttagtgttgaaccacatggtt 377
Query: 178 tatctaccatgagccttatcattaaaaaatagaaggggactctcttttgtcagaagtcag 237
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 378 tatctaccgtgagccttatcattaaaaaataggaggggactctcttttgtcagaagtcag 437
Query: 238 tagctccacagttagagatttcttcctcttctacactggagtgttgactgggttgatttt 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tagctccacagttagagatttcttcctcttctacactggagtgttgactgggttgatttt 497
Query: 298 gtgctatgggttcatgagtataaagggcctgacatatccagaagacagcattttgttctg 357
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 498 gtgctgtgggttcatgagtataaagggcctgacatatccagaagacagcgttttgttctg 557
Query: 358 atcctcctcacctctggctcttaccaaccctccctcttccaagatgatcccctgagcctt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 atcctcctcacctctggctcttaccaaccctccctcttccaagatgatcccctgagcctt 617
Query: 418 gggggcgggcaatatagatgtcccattcgtagctgaacactccccagtctcagcacctta 477
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gggggcgggcaatataggtgtcccattcgtagctgaacactccccagtctcagcacctta 677
Query: 478 accagttgtgagtttctgtgttaccaaccatgtgctgtgtagagagacctgcttgctgaa 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 accagttgtgagtttctgtgttaccaaccatgtgctgtgtagagagacctgcttgctgaa 737
Query: 538 gcatgaaagctgcagtaatctgggtgcaggaccatctgtctgtgcccggggtcttcggtg 597
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 738 gcatgaaagctgcagtaatctgggtgcaggaccgtctgtctgtgcccggggtcttcggtg 797
Query: 598 atgggagaggacagagactttctgagtgcctggaccctgacctggagtcacatctggtcc 657
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 798 atgggagaggacagagactttctgagtgcctgggccctgacctggagtcacatctggtcc 857
Query: 658 tcatcttggagcttcagcttcctctgtaacccctacaa 695
||||||||||||||||||||||||||||||||||||||
Sbjct: 858 tcatcttggagcttcagcttcctctgtaacccctacaa 895
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space: 743225
Effective search space used: 743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_l01.g1 MSMg01no521_l01.g1 CHROMAT_FILE:
MSMg01no521_l01.g1 PHD_FILE: MSMg01no521_l01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:06 2005
(663 letters)
>mm_chr3_34506746_34507807
Length = 1062
Score = 1007 bits (521), Expect = 0.0
Identities = 533/537 (99%), Gaps = 1/537 (0%)
Strand = Plus / Minus
Query: 1 tgttaagcacaggtgttaatgagccatggttcatggttcaggcagcccagagggcaggcc 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 536 tgttaagcacaggtgttaatgagccatgtttcatggttcaggcagcccagagggcaggcc 477
Query: 61 tagggactcctcttctgtgttttgggaggcagtaaatgttgctgtgtatcttggctattt 120
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 476 tagggactcctattctgtgtttt-ggaggcagtaaatgttgctgtgtatcttggctattt 418
Query: 121 ggggacttcatttgagccatgctctgcatagctgatactgactagtaaacaagtcgaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ggggacttcatttgagccatgctctgcatagctgatactgactagtaaacaagtcgaggc 358
Query: 181 cttcgaagtccctttcaatgctctgaggacagatagcttagcaggtgtcaccactaaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 cttcgaagtccctttcaatgctctgaggacagatagcttagcaggtgtcaccactaaaca 298
Query: 241 cgccacacaagatgaatggagaagaggacttgttggcccatcctcagcaccaccctctct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 cgccacacaagatgaatggagaagaggacttgttggcccatcctcagcaccaccctctct 238
Query: 301 gcaggcattagctgttacagagttagaagcacagtatctggggtgtagctcagtggcgaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 gcaggcattagctgttacagagttagaagcacagtatctggggtgtagctcagtggcgaa 178
Query: 361 tgacttacccagcatgtgcaaagctctggattcctatgcccatttccaaaacccagaatg 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 tgacttacccaacatgtgcaaagctctggattcctatgcccatttccaaaacccagaatg 118
Query: 421 aaacaaacaaagacctggcaaagggtggaagggagagacagaacagcaatcccaagttct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 aaacaaacaaagacctggcaaagggtggaagggagagacagaacagcaatcccaagttct 58
Query: 481 gagcagacttgcagctactggagaggctctctccacataacatcaaggtcctgctgt 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57 gagcagacttgcagctactggagaggctctctccacataacatcaaggtcctgctgt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1062
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1052
Effective search space: 686956
Effective search space used: 686956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
