ACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAGACAAAGACAATGTGTGTACTGACTGACGGGTGTCATTTTAA
TAGCATAATTACTTGATAAGTACTTTACACGATGCAGTTACTGCTCTTCA
GCCTTACTGAGGTGTTGAATTGTATCAAGTACAGTCAAAAATCAGGGCAA
ATCTGTGCCCTGCAGCATTTTAGGGGACTTATCCTTGTTGAATCATTAAA
TGACCCTTGTAAGGATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TTTGTATACACATGAGTGCTCAGGCTCACATGTACTTTTGTGCACATGTA
CGAGTGTGTACATGAGAGCAGTGTTCAGGCTTACGTGTACTTGTGTTCAC
GTGTGTGTGTGTGTGTGTGTGTGTACATGGGTGCTCAGACTCACATGTAC
TTGTGTGAACATGTGTGTGAAGGCTAAAGGTGATGGCTAGGTACTTCTCT
CAGTCACTCTCCACCTTGTGTTTTGAGACAGTCTCTTAGGGAGCCTGGAG
CCTACCGACTTGGTTAGACTGGTTGGTCTGCAAGGCCCAGGAATCTTGCC
CTCTCTGCCACCTCAAGGCTAGCGTTATAGATGCATACTGTGTCTGGCTT
TTCAAGTGGGTGTATGGTGATCTGAACTCCAGTCCTCACATTTGCAAAGC
AAGACTTTACTGACCTACCCCCTTATTGGGCTTTTATATAAAATAAATAG
CTCCTTTACATTTT

ACTATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATC
ATGAGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTG
TCCTGGATTGGGCGAAGTGGGCATTCTGGGTTCTGATGATGGTGAGTGGT
CCTGGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAA
TCTCTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAGAGATTGTTCCTCTG
TTGATTTTGTTACCCTCTATCGGCAGGCGTGGGAGACAAGCTCTCTTCTC
TGAGTTTCAGTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCAG
GGAAGGTGTACAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGA
AGGCCCAAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAG
GTGGCCAGTTGTCTGGAGTCGAAGATGTCGCCGCCTCAGAAGCTCTGTGG
CTCTTGTCCGGAAGGAGGCCGGCCGTCTGGAGCTGAGGTTGGCGCCGCCT
CAGAAGCTCTATGGCTCTTGCCGGGAAGGTGGCTGGTTGTCTGGAGCTGA
AGATGGCGCCGCCCCAGAATCTCTGCGACTCTCTCGCCCGTCCCAGAAAC
GGCTGGCACTCTGTATTCCACACGGTCACCCGTGCAGCCTGCCCTCCGCG
GAGTCCCGGAGCCAAGAAGG

Query= MSMg01no521_n17.b1 MSMg01no521_n17.b1 CHROMAT_FILE:
MSMg01no521_n17.b1 PHD_FILE: MSMg01no521_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:18 2005
         (492 letters)



>mm_chr3_34113110_34114001
          Length = 892

 Score =  750 bits (388), Expect = 0.0
 Identities = 448/488 (91%), Gaps = 35/488 (7%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagagacaaagacaatgtgtgtactgactgacgggtgtcattttaatagcataat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagagacaaagacaatgtgtgtactgactgacgggtgtcattttaatagcataat 264

                                                                       
Query: 65  tacttgataagtactttacacgatgcagttactgctcttcagccttactgaggtgttgaa 124
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 265 tacttgataagtactttacacgatgcagttactgctcttcagccttaccgaggtgttgaa 324

                                                                       
Query: 125 ttgtatcaagtacagtcaaaaatcagggcaaatctgtgccctgcagcattttaggggact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgtatcaagtacagtcaaaaatcagggcaaatctgtgccctgcagcattttaggggact 384

                                                                       
Query: 185 tatccttgttgaatcattaaatgacccttgtaaggatggtgtgtgtgtgtgtgtgtgtgt 244
           |||||||||||| ||||||||||||||||||||||   |||     ||||||||||||||
Sbjct: 385 tatccttgttgagtcattaaatgacccttgtaagg---gtg-----gtgtgtgtgtgtgt 436

                                                                       
Query: 245 gtgtgtgtgtgtttgtatacacatgagtgctcaggctcacatgtacttttgtgcacatgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gtgtgtgtgtgtttgtatacacatgagtgctcaggctcacatgtacttttgtgcacatgt 496

                                                                       
Query: 305 acgagtgtgtacatgagagcagtgttcaggcttacgtgtacttgtgttcacgtgtgtgtg 364
           | ||||||||||||||||||||||||||||||||| ||||||||||||||          
Sbjct: 497 atgagtgtgtacatgagagcagtgttcaggcttacatgtacttgtgttca---------- 546

                                                                       
Query: 365 tgtgtgtgtgtgtgtacatgggtgctcagactcacatgtacttgtgtgaacatgtgtgtg 424
               |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 547 ----tgtgtgtgtgtacatgggtgctcagactcacatgtacttgtgtgaacatgagtgtg 602

                                                                       
Query: 425 aaggctaaaggtgatggctaggtacttctctcagtcactctccaccttgtgttttgagac 484
           |   |          |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 a---c----------ggctaggtacttctctcagtcactctccaccttgtgttttgagac 649

                   
Query: 485 agtctctt 492
           ||||||||
Sbjct: 650 agtctctt 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)