BAC Information

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BAC

Clone NameMSMg01-522C10
Chromosome3 (Build37)
Map Location 81,751,076 - 81,878,141
singlet/doubletdoublet
Overlap geneCtso, Tdo2, Accn5, Gucy1b3
Upstream geneEG626841, Pdgfc, LOC229443, LOC100041901
Downstream geneGucy1a3, Mtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522C10.T7 (MSMg01no522_c10.b1)MSMg01-522C10.TJ (MSMg01no522_c10.g1)
ACCAG592778AG592779
length763744
length of high quality
(start - end)		558 (53 - 610)567 (83 - 649)
definitionCHROMAT_FILE: MSMg01no522_c10.b1 PHD_FILE: MSMg01no522_c10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:41 2005CHROMAT_FILE: MSMg01no522_c10.g1 PHD_FILE: MSMg01no522_c10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,877,588 - 81,878,141)(81,751,076 - 81,751,642)
sequence
NNNNNAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAAAGATCCCGCAGAGTCCCCCCTTTTAGAATAGGGTAC
CCGAAAGCTTATCCTGAAGGCGAATGACAGGTCAGAGGCACCGGGTGGAA
GACCGGGTTGCAAGGCGCGGGTCCTTGACCACGGTCTCTCTCTCTGCCCT
TCAGTACGGTTTCGTGAACCATGCCCTGGAGCTGCTGGTGATCCGCAATT
ATGGTCCCGAGGTGTGGGAAGACATCAAGTAAGTGAACCGCCCCGCTCCC
AGGGCCGCGCGTTGGCACCGAGCCCGCGCCCGCCCGCTTCCCTGGCTGCT
CCCAGCAGGGTCGTGGTGCGCATCCTCCGGTCTCCTCTCCCACGCTCCGA
AGCCGGGACCAGGAGAGGAGGGTAGGCCGGGGCGTGGCCGCGTGATCAAG
CCCCTTGGGGTCGCTGCGGCCTCTTCACCCGGACTGAGCGTGGGAACACC
CAGACAGGCAGAGCACTGTGACTCCCAGGCCAGGTTCAGAGGGTTGGCTA
GCTCCCATGCAAGGGGACCTGGGGGCTTCCTGGGCCTCTGCAAGGTCTTA
GGATCAGAGGCAGGAAATGAACAGAAGATTCGCTTTCTTTTGCGATTTGC
ACACCAGGAACACGTAATATGGTTAATCATTTGGTTATGGGATAGTACAC
TCAAAGATTATTTCTCCAGTAAGTCATGAGAAAACCATATGTAATAAAGG
GACATTTTTCCTT

NNNNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGGGCCATTTAGTCCC
ACAAATGAGTAAAATGCACCTTTAGAATAAGAAGTCAGACAACAGAAGAG
AGCAACTCGGGAATCTATTGTTAAATGCTTTTTGGGTTATTGTGCCATTG
TGAAAACATCATCAGGAATAAAATAATTTATTTCAGACAAGGGCATAGAA
TATCTTATGGCTACTGTTGCTTGGACCCAGTGCCATCTACATGGGACATA
ATTGCAATCAGGGGTGAAATTAGATCTTTGAACAAAATATGGCCCTTTAA
ATAGACATATAAGTTCCCAGAGCACGAAAGATTGTCAACACAGCTCCTGC
TGCAAAGGACGTGAAAATGGCCCTAAGAACACACAGTCGAACCTTTCCTC
CATGACTGGCTGCACAGGGCTCTGTCTATAAGGACCTTGGCCACTGTCTC
CTTAGGGAGTGAAGGCAATCCACTTCCTGGAGGGGAAAGTAAAGCTATTC
GCAGGAGAACCCAGACTTCCACATGTAAGTAATTGGAATCAAGGGAATAA
CTGTTCCCAGGGAACATGATCGTAAGTGGATAATAGGGAAGAGACAGAAG
AATAGTTTCACCTGAATGATTGGGGGTGGGGAGACTTGTGATGAATGAGG
TTAGAGAAAGAGACACTTCCGTACCATATAATCCCTACAGGCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_c10.b1 MSMg01no522_c10.b1 CHROMAT_FILE:
MSMg01no522_c10.b1 PHD_FILE: MSMg01no522_c10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:41 2005
         (558 letters)



>mm_chr3_81877384_81878341
          Length = 958

 Score = 1064 bits (550), Expect = 0.0
 Identities = 553/554 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaagatcccgcagagtccccccttttagaatagggtacccgaaagcttatcctg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 gaattcaaagatcccgcagagtccccccttttagaatagggtacccgaaagcttatcctg 699

                                                                       
Query: 65  aaggcgaatgacaggtcagaggcaccgggtggaagaccgggttgcaaggcgcgggtcctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 aaggcgaatgacaggtcagaggcaccgggtggaagaccgggttgcaaggcgcgggtcctt 639

                                                                       
Query: 125 gaccacggtctctctctctgcccttcagtacggtttcgtgaaccatgccctggagctgct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gaccacggtctctctctctgcccttcagtacggtttcgtgaaccatgccctggagctgct 579

                                                                       
Query: 185 ggtgatccgcaattatggtcccgaggtgtgggaagacatcaagtaagtgaaccgccccgc 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 578 ggtgatccgcaattatggtcccgaggtgtgggaagacatcaagtaagtgaacagccccgc 519

                                                                       
Query: 245 tcccagggccgcgcgttggcaccgagcccgcgcccgcccgcttccctggctgctcccagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tcccagggccgcgcgttggcaccgagcccgcgcccgcccgcttccctggctgctcccagc 459

                                                                       
Query: 305 agggtcgtggtgcgcatcctccggtctcctctcccacgctccgaagccgggaccaggaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 agggtcgtggtgcgcatcctccggtctcctctcccacgctccgaagccgggaccaggaga 399

                                                                       
Query: 365 ggagggtaggccggggcgtggccgcgtgatcaagccccttggggtcgctgcggcctcttc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ggagggtaggccggggcgtggccgcgtgatcaagccccttggggtcgctgcggcctcttc 339

                                                                       
Query: 425 acccggactgagcgtgggaacacccagacaggcagagcactgtgactcccaggccaggtt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 acccggactgagcgtgggaacacccagacaggcagagcactgtgactcccaggccaggtt 279

                                                                       
Query: 485 cagagggttggctagctcccatgcaaggggacctgggggcttcctgggcctctgcaaggt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 cagagggttggctagctcccatgcaaggggacctgggggcttcctgggcctctgcaaggt 219

                         
Query: 545 cttaggatcagagg 558
           ||||||||||||||
Sbjct: 218 cttaggatcagagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no522_c10.g1 MSMg01no522_c10.g1 CHROMAT_FILE:
MSMg01no522_c10.g1 PHD_FILE: MSMg01no522_c10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:41 2005
         (567 letters)



>mm_chr3_81750876_81751842
          Length = 967

 Score = 1058 bits (547), Expect = 0.0
 Identities = 562/567 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgggccatttagtcccacaaatgagtaaaatgcacctttagaataagaagtcagacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgggccatttagtcccacaaatgagtaaaatgcacctttagaataagaagtcagacaa 260

                                                                       
Query: 61  cagaagagagcaactcgggaatctattgttaaatgctttttgggttattgtgccattgtg 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaagagagcaactctggaatctattgttaaatgctttttgggttattgtgccattgtg 320

                                                                       
Query: 121 aaaacatcatcaggaataaaataatttatttcagacaagggcatagaatatcttatggct 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaacatcatcaggaataaaatcatttatttcagacaagggcatagaatatcttatggct 380

                                                                       
Query: 181 actgttgcttggacccagtgccatctacatgggacataattgcaatcaggggtgaaatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgttgcttggacccagtgccatctacatgggacataattgcaatcaggggtgaaatta 440

                                                                       
Query: 241 gatctttgaacaaaatatggccctttaaatagacatataagttcccagagcacgaaagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatctttgaacaaaatatggccctttaaatagacatataagttcccagagcacgaaagat 500

                                                                       
Query: 301 tgtcaacacagctcctgctgcaaaggacgtgaaaatggccctaagaacacacagtcgaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtcaacacagctcctgctgcaaaggacgtgaaaatggccctaagaacacacagtcgaac 560

                                                                       
Query: 361 ctttcctccatgactggctgcacagggctctgtctataaggaccttggccactgtctcct 420
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 ctttcctccatgactggctgcacagggctctgtatataaggaccttggccactgtctcct 620

                                                                       
Query: 421 tagggagtgaaggcaatccacttcctggaggggaaagtaaagctattcgcaggagaaccc 480
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagggagtgaaggtaatccacttcctggaggggaaagtaaagctattcgcaggagaaccc 680

                                                                       
Query: 481 agacttccacatgtaagtaattggaatcaagggaataactgttcccagggaacatgatcg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agacttccacatgtaagtaattggaatcaagggaataactgttcccagggaacatgatcg 740

                                      
Query: 541 taagtggataatagggaagagacagaa 567
           ||||||||||| |||||||||||||||
Sbjct: 741 taagtggataacagggaagagacagaa 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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