NAATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCATGGGTCTTGTATGTAGAAAAAGAGTGTCTTGTGGTGTTGA
TAAAAGAGATGATTGGTCCATTATCCTAGCTTATGTATCTGACAAGACCG
ATATGGGCAGTCCCCATATTCTTCTGGCCATTTTCTACAATAATCTTTTG
TCTGGTCAAAGAGAAAGCAAGCATAGAGATCATAATAGTTAGATGGGATA
ACAGCAATTTGGATTGATTCCTGGCATCTGGCTATGGAGGAGTTTCCTGA
CCCTAATTGGAAAGACTGTTTGGTATCTGTGGGGGTTTCTTGGATCTTGA
ATCTCTAGATGTAAGGGCTACCCTGGATAGAAATGAACATCAGTGGAAAG
ACGAGAAACCCATGTCTAATCCAGTGAGGTTGAGCTCGGCTGCCATAGTG
GAGTCTTATTTTCAAGATGGGTGGTCTCAACGTCCTCTGCAACTTAACAG
TGTATGGTCCTGTTAGGGTCAATGTGAATGAAGAAGAGTCATTTTTGTGA
ATGAAAGGTTTGAGGTGAGACAGATGGACCTAATGAGAGCTTCCCTCAAT
TTTAGCAGCTGTAGGGGTCACAAGAGTACCTTAAAAAGGCTCTGCCATTT
GGGAGAGAGGGGTGAGGGCTGATAGTCTGGAGGGGATAGAAGGAATTGGT
CTCCAGTACTGACAGGTAGTGGATAGGAGATAGTGTATGGCTGTGGTAGA
TGGTGAT

NAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTAATGGTTTTCTAAGTG
TTTTAGTTATATCTTATTAAACATGTATAATCACAGTGACAGTGTATTGT
TTTATATATATATTTTTCCATAAATCTATTTATATCATTTCAGACTAATA
ATTAATTACATAATTGCAACATTCCATCTATATTTCATAATAAAATGTAT
GCAGAGCTGATTTCCAATTGGTAACTGTGACACTTTGAAAAATAATTGGT
ATGATTGACAAGGGTATATAAAAATGGTGATTATTAATCCTAAAATAAAA
TAAAATAAAATAAATGTTTTCCTTCTTGAGAACATTTAAGGATACATGAA
TTAATCTTGGTTTAAATAGAATATGACATGAAATTTTAGGGTAAATTTGA
CAGGTTGAAGTGGTATTTCAAGAAATAAAGTAAATAACAGAAATCTCTGA
GATATTCCATTTAAAGCTGTGAAGATAAAACATCAATTGTTGATGATAGC
TTAAGCAATGTTGCTTTTATTGTAGGTGGGTTTATGATAAGATAGCTGAG
ATCTAAGAAGACTCACAAATAGGGAGATTGTCCAAAACAGGAAGAAATGT
AGTGAAACAGAGGCTTAAAATTAAAGCTACATATCATAGTCATTAATCCT
CTTGTTTATGCTGAAAAATTACTATAAAATGTTAGAAAAAATCAATGGCT
AATGGCTCN

Query= MSMg01no522_g05.g1 MSMg01no522_g05.g1 CHROMAT_FILE:
MSMg01no522_g05.g1 PHD_FILE: MSMg01no522_g05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:59 2005
         (652 letters)



>mm_chr3_11267979_11269030
          Length = 1052

 Score = 1060 bits (548), Expect = 0.0
 Identities = 564/572 (98%), Gaps = 5/572 (0%)
 Strand = Plus / Minus

                                                                        
Query: 81   atatttttccataaatctatttatatcatttcagactaataattaattacataattgcaa 140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1052 atatttttccataaatctatttatatcatttcagactaataattaattacataattgcaa 993

                                                                        
Query: 141  cattccatctatatttcataataaaatgtatgcagagctgatttccaattggtaactgtg 200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992  cattccatctatatttcataataaaatgtatgcagagctgatttccaattggtaactgtg 933

                                                                        
Query: 201  acactttgaaaaataattggtatgattgacaagggtatataaaaatggtgattattaatc 260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932  acactttgaaaaataattggtatgattgacaagggtatataaaaatggtgattattaatc 873

                                                                        
Query: 261  ctaaaataaaataaaataaaataaatgttttccttcttgagaacatttaaggatacatga 320
            |     ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 872  c-----taaaataaaataaaagaaatgttttccttcttgagaacatttaaggacacatga 818

                                                                        
Query: 321  attaatcttggtttaaatagaatatgacatgaaattttagggtaaatttgacaggttgaa 380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817  attaatcttggtttaaatagaatatgacatgaaattttagggtaaatttgacaggttgaa 758

                                                                        
Query: 381  gtggtatttcaagaaataaagtaaataacagaaatctctgagatattccatttaaagctg 440
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757  gtggtatttcaagaaataaagtaaataacagaaatctctgagatattccatttaaagctg 698

                                                                        
Query: 441  tgaagataaaacatcaattgttgatgatagcttaagcaatgttgcttttattgtaggtgg 500
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697  tgaagataaaacatcaattgttgatgatagcttaagcaatgttgcttttattgtaggtgg 638

                                                                        
Query: 501  gtttatgataagatagctgagatctaagaagactcacaaatagggagattgtccaaaaca 560
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 637  gtttatgataagatagctgagatctaagaagactcacaaatagagagattgtccaaaaca 578

                                                                        
Query: 561  ggaagaaatgtagtgaaacagaggcttaaaattaaagctacatatcatagtcattaatcc 620
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577  ggaagaaatgtagtgaaacagaggcttaaaattaaagctacatatcatagtcattaatcc 518

                                            
Query: 621  tcttgtttatgctgaaaaattactataaaatg 652
            ||||||||||||||||||||||||||||||||
Sbjct: 517  tcttgtttatgctgaaaaattactataaaatg 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)