Query= MSMg01no522_l15.b1 MSMg01no522_l15.b1 CHROMAT_FILE:
MSMg01no522_l15.b1 PHD_FILE: MSMg01no522_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:24 2005
(610 letters)
>mm_chr3_118977455_118978462
Length = 1008
Score = 1083 bits (560), Expect = 0.0
Identities = 576/582 (98%), Gaps = 2/582 (0%)
Strand = Plus / Minus
Query: 4 ggaattcagttacaatggaagaggggcagatatattatccaccccacccccaccccactg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 ggaattcagttacaatggaagaggggcagatatattatccaccccacccccaccccactg 724
Query: 64 aaacaccctgcccaattttaagttcaagtttgttcaatttgtgatcatccaaaggatatt 123
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 723 aaacaccctgcccaattttaagttcaaatttgttcaatttgtgatcatccaaaggatatt 664
Query: 124 ttactactgatttttttttcaaattttagctaaacttttaaaaacatatttttctgactg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ttactactgatttttttttcaaattttagctaaacttttaaaaacatatttttctgactg 604
Query: 184 aattatagtctcatttcagctaatggtaagatttgtatataaatctataattttctgcca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 aattatagtctcatttcagctaatggtaagatttgtatataaatctataattttctgcca 544
Query: 244 caaaatcactatgggtgggaactttatatttttaatggaattctttgggagccaatgttc 303
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 543 caaaatcactatgggtgggaactttatatttttaatgaaattctttgggagccaatgttc 484
Query: 304 tgtagagttttgcaaaaattatttacaacattccctgccacagctgaaaaacaagagggt 363
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tgtagagctttgcaaaaattatttacaacattccctgccacagctgaaaaacaagagggt 424
Query: 364 ttttttttttccgattgtgtgaaccattgtattcatgatctgagttttgctaaagataat 423
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ttttttttt--cgattgtgtgaaccattgtattcatgatctgagttttgctaaagataat 366
Query: 424 aaataactcaagcacagttaacacacaatgtttctggtctacatcatgtagtcaatacat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aaataactcaagcacagttaacacacaatgtttctggtctacatcatgtagtcaatacat 306
Query: 484 gcatgggtgaccagtggctatgatatgacctggtgtgaaaagacacagtgaggcccctcc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gcatgggtgaccagtggctatgatatgacctggtgtgaaaagacacagtgaggcccctcc 246
Query: 544 aggaaacccagcaacaggggctgaatgcataaatcattctgt 585
|||||||||||||||||||||||||||||||| |||||||||
Sbjct: 245 aggaaacccagcaacaggggctgaatgcataagtcattctgt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1008
Length adjustment: 10
Effective length of query: 600
Effective length of database: 998
Effective search space: 598800
Effective search space used: 598800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_l15.g1 MSMg01no522_l15.g1 CHROMAT_FILE:
MSMg01no522_l15.g1 PHD_FILE: MSMg01no522_l15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:24 2005
(580 letters)
>mm_chr3_118827793_118828773
Length = 981
Score = 1085 bits (561), Expect = 0.0
Identities = 576/581 (99%), Gaps = 1/581 (0%)
Strand = Plus / Plus
Query: 1 attacactaaatcccacctgacattttggataacttccagcatgaagccatattctcttg 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attacactgaatcccacctgacattttggataacttccagcatgaagccatattctcttg 260
Query: 61 tggtttgaggttgggccttggccctttattatttatctaatttattctatttagtctcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtttgaggttgggccttggccctttattatttatctaatttattctatttagtctcca 320
Query: 121 atcaccttgccagctgactataaatgctattttatattacagtctccttgttttataact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcaccttgccagctgactataaatgctattttatattacagtctccttgttttataact 380
Query: 181 ttgtccttaacccctttagtgaattatcaacaaatacaccaaggacgcatcagtgacttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtccttaacccctttagtgaattatcaacaaatacaccaaggacgcatcagtgacttc 440
Query: 241 cccactgaaatacttactaaacacctcac-tggaccttattaaaactgaacctgaagttt 299
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 441 cccactgaaatacttactaaacacctcacatggaccgtattaaaactgaacctgaagttt 500
Query: 300 tcccactcatcttcctgctagcctttatttcatgttcatatataatttatattctcaaat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcccactcatcttcctgctagcctttatttcatgttcatatataatttatattctcaaat 560
Query: 360 tcagagttcaagctagtagtctaggaatcatacttaatgttatatcatctttgtctcctt 419
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 tcagagttcaagctagtagtctaggaatcatacttaatgttatattatctttgtctcctt 620
Query: 420 gaatctaaatactcagcagccaattaggatctaatgtctctgcatttatgtggctaccac 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 gaatctaaatactcagcagccaattaggatctaatgtctctgcatttatgtggctatcac 680
Query: 480 aagttcctacccaaaatgaaattcctattttcaccatctattgcccttacttgtttcctt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagttcctacccaaaatgaaattcctattttcaccatctattgcccttacttgtttcctt 740
Query: 540 atgaagatttcatacagaggcaagctggatcattttatcag 580
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgaagatttcatacagaggcaagctggatcattttatcag 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 981
Length adjustment: 10
Effective length of query: 570
Effective length of database: 971
Effective search space: 553470
Effective search space used: 553470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
