BAC Information

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BAC

Clone NameMSMg01-522M07
Chromosome3 (Build37)
Map Location 132,356,865 - 132,527,153
singlet/doubletdoublet
Overlap geneA630047E20Rik, LOC668858
Upstream geneOlfr375-ps1, Dkk2, LOC100039018, EG433653, LOC668857, Scye1
Downstream geneNpnt, Gstcd, Ints12, 9130221D24Rik, Ppa2, E130014J05Rik, EG620205, LOC100039168
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522M07.T7 (MSMg01no522_m07.b1)MSMg01-522M07.TJ (MSMg01no522_m07.g1)
ACCAG593248AG593249
length752754
length of high quality
(start - end)		532 (51 - 582)594 (77 - 670)
definitionCHROMAT_FILE: MSMg01no522_m07.b1 PHD_FILE: MSMg01no522_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:27 2005CHROMAT_FILE: MSMg01no522_m07.g1 PHD_FILE: MSMg01no522_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,356,865 - 132,357,393)(132,526,656 - 132,527,153)
sequence
NTTACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGGCATGATTGCCACCACCCTGGTTTAGGAAGTGCAGGTG
ACTCAGTGCAGGGCATTGTACATTTTAGGAAGGCATCTGAACTCCAAGGC
CAGCTGGCTAGGGAATTCTCCCCTGAAGGCAAAGGTGGGCTCCAGAGGTC
TGCCATCCAGGAGAGTCCCAGGCTTGGTAAAATGTAGGAGCTTTTCATCT
CTAGCACTAAATAGTAGATGAGGAGAAAATACAAAAGAAGACTAATAAAT
TACAGGCAGAAGATGGGTAGCATTTCAGTTTGGGTGGATGGGGTGCTTAC
ATAGAGGGGAGACTGAGAGGAGGAGCCAGATAGAAGTTAGGAAGACTGGT
CACACGTGCACACGGTGAAAATGGATAGTACTTAAAATATTGTTTTTGTA
CTGCATGTTAGTAACTTTAGAGGGATATATGTACTTGTTATTAAAGTATG
TTAATTATAAAGTAGATTTGCTTTGTTTTTCTCAGAAAGACTGGTGGTGG
TGGCGGAGCACTGTGAGCGCAGTTTGGAAGACCTTCTACGAGAAAGGAAG
CCTGTGAGGTAGAGTGTGAAGCAAAGGTGGGAAGTGGGGATCCGTAACCC
AAGAAGCATCTGACTGGAGACTGAAGGGCCCTGGCTTCTCTTAATGTTCT
ATAATGAGACCATTCAGTGGAGGTCTTTACCTAAAAACTTTAATTTACCT
GG

NTTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGCACACCCTGAGCACTGTCCT
GACCCCCGCAGCCGTCCCTCCATCCCTCCATGCCTCCCACAGAGGACTTG
CTGATTTCGAAGTACCTTGAATCACAATCTTCCATGGCTGGCAACAAAAG
CATCATGGGGAATCCACCCACGATTAATGAGCTTGCACTTGTGCCAGACA
TGGCGACTCCGTGCGTGTTACTTTGTCCTCACACAACCCCAGTCAGATAC
CATTTTCCCACTTGATTGCAAAAGGAGGCTCAGAGGCCAGGGAAGGTTGA
GAAACCTGCGTAGGTTACAAAGGCGCTGAGGAGCTGTTCCTGTTTGTGTA
AAGGCAGACCTTCTGGCTGCAGGGCTGCTCCTCGCACGTTTCCACTGGAA
TATCAGGTAGCACGTGGGATTGCTTGGGTGATACATCTGTCTGGGAGTTA
TTAACAGGATCTGAGGATAGTTCTAGTCGTGATTCTGAAAAGGAAAGACC
TGTTTTTCCTGGTCTCTTTACAGAAGGCAAACTGTGAGGAGTGGGTGCCT
GCAAAGCAGAGAGAAAGAGATGAGGGAGAAAGGCACAAAAGCCCAGCTCC
TGGGTCCAGACTTTGTGTGTTAAGACAGCAGGGGCTCAACCCACTGAACA
CCTTGCAGTGTGTAAAGTGCGCAGGGGCTCATTGGTGTTACAGGACTGGT
ACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_m07.b1 MSMg01no522_m07.b1 CHROMAT_FILE:
MSMg01no522_m07.b1 PHD_FILE: MSMg01no522_m07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:27 2005
         (532 letters)



>mm_chr3_132356662_132357593
          Length = 932

 Score = 1000 bits (517), Expect = 0.0
 Identities = 526/529 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaggcatgattgccaccaccctggtttaggaagtgcaggtgactcagtgcaggg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaggcatgattgccaccaccctggtttaggaagtgcaggtgactcagtgcaggg 263

                                                                       
Query: 64  cattgtacattttaggaaggcatctgaactccaaggccagctggctagggaattctcccc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cattgtacattttaggaaggcatctgaactccaaggccagctggctagggaattctcccc 323

                                                                       
Query: 124 tgaaggcaaaggtgggctccagaggtctgccatccaggagagtcccaggcttggtaaaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgaaggcaaaggtgggctccagaggtctgccatccaggagagtcccaggcttggtaaaat 383

                                                                       
Query: 184 gtaggagcttttcatctctagcactaaatagtagatgaggagaaaatacaaaagaagact 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtaggagcttttcatctctagcactaaatagtagatgaggagaaaatacaaaagaagact 443

                                                                       
Query: 244 aataaattacaggcagaagatgggtagcatttcagtttgggtggatggggtgcttacata 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aataaattacaggcagaagatgggtagcatttcagtttgggtggatggggtgcttacata 503

                                                                       
Query: 304 gaggggagactgagaggaggagccagatagaagttaggaagactggtcacacgtgcacac 363
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaggagagactgagaggaggagccagatagaagttaggaagactggtcacacgtgcacac 563

                                                                       
Query: 364 ggtgaaaatggatagtacttaaaatattgtttttgtactgcatgttagtaactttagagg 423
           |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 564 ggtgaaaacggatagtacttaaaatattgtttttctactgcatgttagtaactttagagg 623

                                                                       
Query: 424 gatatatgtacttgttattaaagtatgttaattataaagtagatttgctttgtttttctc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gatatatgtacttgttattaaagtatgttaattataaagtagatttgctttgtttttctc 683

                                                            
Query: 484 agaaagactggtggtggtggcggagcactgtgagcgcagtttggaagac 532
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agaaagactggtggtggtggcggagcactgtgagcgcagtttggaagac 732


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no522_m07.g1 MSMg01no522_m07.g1 CHROMAT_FILE:
MSMg01no522_m07.g1 PHD_FILE: MSMg01no522_m07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:28 2005
         (594 letters)



>mm_chr3_132526160_132527153
          Length = 994

 Score =  893 bits (462), Expect = 0.0
 Identities = 489/498 (98%)
 Strand = Plus / Minus

                                                                       
Query: 97  cacaatcttccatggctggcaacaaaagcatcatggggaatccacccacgattaatgagc 156
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994 cacaatcttccatggctggcaacaaaagcatcatggggaatccacccacgattaatgagc 935

                                                                       
Query: 157 ttgcacttgtgccagacatggcgactccgtgcgtgttactttgtcctcacacaaccccag 216
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 934 ttgcacttgtgccagacatggcgactccgtgcgtgttacttcgtcctcacacaaccccag 875

                                                                       
Query: 217 tcagataccattttcccacttgattgcaaaaggaggctcagaggccagggaaggttgaga 276
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 tcagataccattgtcccacttgattgcaaaaggaggctcagaggccagggaaggttgaga 815

                                                                       
Query: 277 aacctgcgtaggttacaaaggcgctgaggagctgttcctgtttgtgtaaaggcagacctt 336
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 aacctgcgtaggttacacaggcgctgaggagctgttcctgtttgtgtaaaggcagacctt 755

                                                                       
Query: 337 ctggctgcagggctgctcctcgcacgtttccactggaatatcaggtagcacgtgggattg 396
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 754 ctggctgcagggctgctcctcgcacgtttccactggaatatcagggcgcacgtgggattg 695

                                                                       
Query: 397 cttgggtgatacatctgtctgggagttattaacaggatctgaggatagttctagtcgtga 456
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 cttggatgatacatctgtctgggagttattaacaggatctgaggatagttctagtcgtga 635

                                                                       
Query: 457 ttctgaaaaggaaagacctgtttttcctggtctctttacagaaggcaaactgtgaggagt 516
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 634 ttctgaaaaggaaagacctgtttctcctggtctctttacagaaggcaaactgtgaggagt 575

                                                                       
Query: 517 gggtgcctgcaaagcagagagaaagagatgagggagaaaggcacaaaagcccagctcctg 576
           |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 574 gggtgcctgcaaagcagagagaaagagatgagcgagaaagccacaaaagcccagctcctg 515

                             
Query: 577 ggtccagactttgtgtgt 594
           ||||||||||||||||||
Sbjct: 514 ggtccagactttgtgtgt 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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