BAC Information

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BAC

Clone NameMSMg01-522O16
Chromosome3 (Build37)
Map Location 143,993,605 - 143,994,059
singlet/doubletsinglet
Overlap genenone
Upstream gene1700001N15Rik, EG668889, EG621809, LOC100039938, LOC100039952, Lmo4
Downstream geneLOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l, Col24a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522O16.T7 (MSMg01no522_o16.b1)MSMg01-522O16.TJ (MSMg01no522_o16.g1)
ACCAG593361AG593362
length735741
length of high quality
(start - end)		620 (52 - 671)455 (85 - 539)
definitionCHROMAT_FILE: MSMg01no522_o16.b1 PHD_FILE: MSMg01no522_o16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:39 2005CHROMAT_FILE: MSMg01no522_o16.g1 PHD_FILE: MSMg01no522_o16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCCTTACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACTTTGTATACCAGGCTGGCCTCGAACTCAGAAATCTGC
CTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCC
GGCTATAAATAGAATTCTTAAAGTCTTGGGTCTATTTTATAGTGCTGATT
TGGGGGAGGGGGATCCTTTAAGACTTGCGTCCATCAGATTGGCCTTCGGT
AAGTGTGTAGGGCATTTTCTTGAATGACGTAGAAGGGCCCAGTTTGTGTG
TGGTTCCACCCTGGGCTGGCGAGTCCTGGGGAAATAAGAAAGCAGGCCGA
GCGGCATGGGAGCAAGCTGGTGCGGTGCCGTGGGGTGCCTTGCGCAGCGC
TCCTCCTGCATCGGATTTAGCTCCTGCCTCCAGGGTCCACCTTGATTTCC
TGCCCCAACTTCCCTCAGTGACAGGTTACAACATGGAACTGTGAGCCAAT
AAACTACTTCCCTGAAACAGAAAACAAGCAAAGACAGTTGGCTTTTCTCT
TCTCTCTTTTCTTTCTTCTTTTCTTTTTTTTCTCTTTTGGAATCACTGTT
CTAATTTGATGTACTAGCTCCTGTGGTTAGAAATGAAATAATCCAAATTG
AGCAAACATTTTCTCTACCTGGAAGTCTCAGCTGATGGCTGATAGGCCAT
GATAGGCCACAGTCAGTGTTGATGGGCAGTGTGAG

TTTTTTCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACACTGCTGCCTTGG
CTCTGGGAACACATCTATCACAGAAACCGAGAGAGCGTCTGCATTTACAC
ACGGAAAAGGTTCGCTTCGTCCTTGATCACGATAATGACTTAGAGTTCTG
TTGAGCCTTTCATCCACGGGGGCGCCCCTGCCCCTGCAGACGTGGGCCGG
GGAGGAGCTCTCAACAGTCACAGCCCCATTCCTGCCATGGTGAGAGAGGA
AATGGTTCTGAGGGAGGTGGGTATTGAAAGAGACAAGCAGGCGCTGTAGT
TCTATCAGCAGAAGTCAGGAGGCACCTAAAACAGCGCCTGACACTTGGCA
ATAACAGGAGAAGCTATCCACTGATACTCCAACAAAGGAAGAGCTTACAG
GGCCACGCCTCGCCCTATGGAAACTAATTGCTCCTTGGGCTTCTTAAACC
TACCTTGGCCAGCTGAGAAGCAGTAGGATCATTTTCTAGGCTTCCTTTTG
CCCTGAGGTGTGAAGGTAGCTGCGGCCCGGGGACAAGGGGAAAGCGCTCG
CTGCCGAAGGGGCCTGGGGGGGGGGGGAAGTTTGTAATCTCCTCTTTCTT
TATTTGGTATTGGCGCTCTTTTATCAATTTGGATTTCTTGTTTAATGGTT
GACTCCTCGTTTATAAGCCATGAGAGTTATCTTCCCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_o16.g1 MSMg01no522_o16.g1 CHROMAT_FILE:
MSMg01no522_o16.g1 PHD_FILE: MSMg01no522_o16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:39 2005
         (455 letters)



>mm_chr3_143993405_143994259
          Length = 855

 Score =  880 bits (455), Expect = 0.0
 Identities = 455/455 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacactgctgccttggctctgggaacacatctatcacagaaaccgagagagcgtctgcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacactgctgccttggctctgggaacacatctatcacagaaaccgagagagcgtctgcat 260

                                                                       
Query: 61  ttacacacggaaaaggttcgcttcgtccttgatcacgataatgacttagagttctgttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttacacacggaaaaggttcgcttcgtccttgatcacgataatgacttagagttctgttga 320

                                                                       
Query: 121 gcctttcatccacgggggcgcccctgcccctgcagacgtgggccggggaggagctctcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcctttcatccacgggggcgcccctgcccctgcagacgtgggccggggaggagctctcaa 380

                                                                       
Query: 181 cagtcacagccccattcctgccatggtgagagaggaaatggttctgagggaggtgggtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtcacagccccattcctgccatggtgagagaggaaatggttctgagggaggtgggtat 440

                                                                       
Query: 241 tgaaagagacaagcaggcgctgtagttctatcagcagaagtcaggaggcacctaaaacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaaagagacaagcaggcgctgtagttctatcagcagaagtcaggaggcacctaaaacag 500

                                                                       
Query: 301 cgcctgacacttggcaataacaggagaagctatccactgatactccaacaaaggaagagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgcctgacacttggcaataacaggagaagctatccactgatactccaacaaaggaagagc 560

                                                                       
Query: 361 ttacagggccacgcctcgccctatggaaactaattgctccttgggcttcttaaacctacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttacagggccacgcctcgccctatggaaactaattgctccttgggcttcttaaacctacc 620

                                              
Query: 421 ttggccagctgagaagcagtaggatcattttctag 455
           |||||||||||||||||||||||||||||||||||
Sbjct: 621 ttggccagctgagaagcagtaggatcattttctag 655


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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