BAC Information

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BAC

Clone NameMSMg01-523N12
Chromosome3 (Build37)
Map Location 77,292,771 - 77,293,261
singlet/doubletsinglet
Overlap genenone
Upstream geneFstl5, LOC100041625, LOC100041635
Downstream geneDnmt3a-ps1, EG626461, LOC667526, LOC626479, LOC100041691
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523N12.T7 (MSMg01no523_n12.b1)MSMg01-523N12.TJ (MSMg01no523_n12.g1)
ACCAG594062AG594063
length747747
length of high quality
(start - end)
525 (47 - 571)594 (79 - 672)
definitionCHROMAT_FILE: MSMg01no523_n12.b1 PHD_FILE: MSMg01no523_n12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:54 2005CHROMAT_FILE: MSMg01no523_n12.g1 PHD_FILE: MSMg01no523_n12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCAACATGAAATTCTCAAATGGCCGTGAAGCACTTAAAGAAATG
CTCAACATCCTTGGTCATCAGGGAAATGCAAATCAAAATAACCATGAGAT
TCCAACACGTCTCCATCCTGGTGGGATTCCAAACTGTACAACCGCTCTGG
AAATCAATCTTTTGGTTCCTCAGAATTTAGAAGTAATTCTACCTGAAGAC
TCAGCTATAAAACTCTTGGGCATATACCCAAAAGATGCTCCACCATATGA
CAAAAACAGGTGCTTTGCTATGTTCATAGCAGCTGTATTTGTAATAGTCA
GGAACTGGAAGCAACGCAGATGTCCCTCAACCAAAGAATGGATACAGAAG
ATGTGTTTCATTTACACAAGTAATTGTGTTCTTGATCAAAACCTTCCCAT
TCTCTAGGCTGCTTTTTGTTAGGAATAACTGTGCCTTCTACCCAGCACAA
GCCCTTTAGTTTCATGGGGACCTACTTATTAATTATTAAATTTAGTGCCT
GTGCTTACATTCTGTTCAGAGATACAATATGTTTCCTGTGCTAAAGAATT
CAGGACTACCCACCGTTTTTTTCCTATGAGATTCAGTATTACCGGTTTCA
TGTTGAGGTCTTCGACCTATTTCGATTAGAGTTTCTGCAGTGTCTTATAT
ATGGATCTAGTTGGATTCTTCTCATGCAGTAATCCAGTTTGACCAGN
NTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGATTAGCACTGTTAGGAGCAC
ATACCTTATATGCAGTTGAGTTCCAGTACTTCTGTACAGATCTAGTCAGC
TTGTACCCTCAGTGCACTCAGTGCAGTTTCATTCATGGAATTCAGTGGCA
GTATATCCAAGCAGAGGAATTCAGTCAGAAGCAGCCTATTTAAATCAGTC
AGCTTAGAAGATTAGATTTTATAGAGACTAGAAACTTACAGGCCTAGGCC
TAGGGTTAGTTAGACCAAAGAAGGAAACACATTGGGCTTATGCCAAGCCA
TGTATTCTCATAGCTTGGGTATAAAGATCATCTCATCCCATCATCTGAAG
AAATACAAGCAACATTTACATTGGTTTCTTTTTTAAAAAAATAAACTTTG
TAATGACAAAATACATAAGTCTTACAAATTAACTTTATGGCCAATATTAA
TGACCTGAATTCTTGCCTAAAATAATTCATTCACTAAGATGTATCAAGAA
AATCATACTCTATTAGAGTACATGTGTTATTTACATAGTGAAAAAAGGAT
AACCATGCATTTTTCAATTTATACTTATAAAGCAAATAATTATTAATATA
ATAATAAAATCTAAGAATAATGTCAAAATGGCAATTCATCATTATTGATT
ATATATAATAATAGCACTTATAATTGATGGTATGTAATTTTTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_n12.g1 MSMg01no523_n12.g1 CHROMAT_FILE:
MSMg01no523_n12.g1 PHD_FILE: MSMg01no523_n12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:54 2005
         (594 letters)



>mm_chr3_77292268_77293261
          Length = 994

 Score =  949 bits (491), Expect = 0.0
 Identities = 491/491 (100%)
 Strand = Plus / Minus

                                                                       
Query: 104 ttcatggaattcagtggcagtatatccaagcagaggaattcagtcagaagcagcctattt 163
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994 ttcatggaattcagtggcagtatatccaagcagaggaattcagtcagaagcagcctattt 935

                                                                       
Query: 164 aaatcagtcagcttagaagattagattttatagagactagaaacttacaggcctaggcct 223
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 aaatcagtcagcttagaagattagattttatagagactagaaacttacaggcctaggcct 875

                                                                       
Query: 224 agggttagttagaccaaagaaggaaacacattgggcttatgccaagccatgtattctcat 283
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 agggttagttagaccaaagaaggaaacacattgggcttatgccaagccatgtattctcat 815

                                                                       
Query: 284 agcttgggtataaagatcatctcatcccatcatctgaagaaatacaagcaacatttacat 343
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 agcttgggtataaagatcatctcatcccatcatctgaagaaatacaagcaacatttacat 755

                                                                       
Query: 344 tggtttcttttttaaaaaaataaactttgtaatgacaaaatacataagtcttacaaatta 403
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 tggtttcttttttaaaaaaataaactttgtaatgacaaaatacataagtcttacaaatta 695

                                                                       
Query: 404 actttatggccaatattaatgacctgaattcttgcctaaaataattcattcactaagatg 463
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 actttatggccaatattaatgacctgaattcttgcctaaaataattcattcactaagatg 635

                                                                       
Query: 464 tatcaagaaaatcatactctattagagtacatgtgttatttacatagtgaaaaaaggata 523
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tatcaagaaaatcatactctattagagtacatgtgttatttacatagtgaaaaaaggata 575

                                                                       
Query: 524 accatgcatttttcaatttatacttataaagcaaataattattaatataataataaaatc 583
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 accatgcatttttcaatttatacttataaagcaaataattattaatataataataaaatc 515

                      
Query: 584 taagaataatg 594
           |||||||||||
Sbjct: 514 taagaataatg 504


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)