XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTTC
ATGACAAGGTAACTCCTTGAAACTTACTAAATGCATCTAAAACCAAGTCA
CATGAAATATAACAAATAGCCTCATAGTTTGCTTGGTTACTACAAGTGTT
TATTCCATGTATTTAATAATTGTGAGTGTGACTATGTGTGTGTCACAGTA
TGCTTATGAAATTGTGATGATAATTGGCAGAATTAAATTGTCTTCATCCA
TTATATGAGTCCTGAAGATCAAATAAAGCAAATACAGGTATTTAGGTCAT
GGGGCTTGGTGGTAGTATCATTAAGTACTGAGTCATTATTGGAGTGCTAC
CATTGTCATAGATTACAGAGAAAATTGCCTGATACATATAAAAATATATT
CACACTTCTTGTCTCTGGTTTTATGTGGACATCTTTGATCCACTTGAACT
TGAGCTTTGTACAAGGAGATAAGAATGGATCCATTTGCATTTTTCTACAT
GTTGATATCCAGTTGAACCAGGACCATTTGTTGAAAATGCTGTCTTTTTT
TCCACTAGATAATTTTAGTTACTTTGTCAAAGAGCAAGTGACTGTAGGTA
TAAAGGTTAGTTTCTGGGTCTTAAATTCTGTTCCATTGATCTACCTTCCT
GTCTCTGTACAAATACCATGCAGTTTTGATCTGCATTATTGATCACTATT
GATCTAATGCAATTTGAGGTCAGGGATGGTGATTTGTCCAGAAGCTCTTT
GACT

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCATTCACCATTCTCATCAATGGACAGATTCTGGAA
ACAGAAACTAAACAGAGGCACAGTGAAACTAATAGAAGTTATGAACCAAA
TGGATTTGACAGGTATATATAAAACACTTTATCTTAAAACAAGAGAATAT
ACCTTCTTTTTAGCTCCTCACAGTACCTTCTCCAAAACTGACCATATAAT
TGCTCACAAAGCAGGCCTCAACAGATACAAGAAGATTGAAATATCTCCAT
ATACCTATCAGATCACCACAGACTAAGGCTGATTTGAATAATAACATAAA
CAATAGAAAGCCCACATACAACTGAAAGCTGAACAACACTCCACATGGCC
AAGGAAGCAAGAAGGAAAGAAATTAAAGATGGTTTAGAGTTTAGTGAAAA
TGAAGCCACAACATACCCAAACTTATGGGACACAATGAAAGCATCACTAA
GAGGAAAACACAGAGCTCTGAGTGCCTGCAAAAAGAAACTGGAGATTGCA
TACATGAGCATCTTGGCAGCACATATGAAAGCTCTAGAACAAAAAGAACC
AAATACACCCAAGAGGAGCAGAACACAGAAAATAATCAAACTCAGGGCTG
AAATCAACAAAGTAGAAACAAAAAAACAACTAAACAAAGAATCCACCAAA
TGAGAAGCTGGTTCTTTGAGAAAATCAGCAAGATAGATAAACCCTTTACA
TATTAAGCAG

Query= MSMg01no525_p14.b1 MSMg01no525_p14.b1 CHROMAT_FILE:
MSMg01no525_p14.b1 PHD_FILE: MSMg01no525_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:46 2005
         (671 letters)



>mm_chr3_46163257_46164327
          Length = 1071

 Score = 1079 bits (558), Expect = 0.0
 Identities = 570/574 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagttcatgacaaggtaactccttgaaacttactaaatgcatctaaaaccaagtc 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 574 gaattcagttcatgacaaggtaactccttgaaacttactaaatgcatctaaaaccaaacc 515

                                                                       
Query: 65  acatgaaatataacaaatagcctcatagtttgcttggttactacaagtgtttattccatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 acatgaaatataacaaatagcctcatagtttgcttggttactacaagtgtttattccatg 455

                                                                       
Query: 125 tatttaataattgtgagtgtgactatgtgtgtgtcacagtatgcttatgaaattgtgatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tatttaataattgtgagtgtgactatgtgtgtgtcacagtatgcttatgaaattgtgatg 395

                                                                       
Query: 185 ataattggcagaattaaattgtcttcatccattatatgagtcctgaagatcaaataaagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ataattggcagaattaaattgtcttcatccattatatgagtcctgaagatcaaataaagc 335

                                                                       
Query: 245 aaatacaggtatttaggtcatggggcttggtggtagtatcattaagtactgagtcattat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aaatacaggtatttaggtcatggggcttggtggtagtatcattaagtactgagtcattat 275

                                                                       
Query: 305 tggagtgctaccattgtcatagattacagagaaaattgcctgatacatataaaaatatat 364
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tggagcgctaccattgtcatagattacagagaaaattgcctgatacatataaaaatatat 215

                                                                       
Query: 365 tcacacttcttgtctctggttttatgtggacatctttgatccacttgaacttgagctttg 424
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 214 tcacacttcttgtctctggttttatgtggacatctttgatcaacttgaacttgagctttg 155

                                                                       
Query: 425 tacaaggagataagaatggatccatttgcatttttctacatgttgatatccagttgaacc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 tacaaggagataagaatggatccatttgcatttttctacatgttgatatccagttgaacc 95

                                                                       
Query: 485 aggaccatttgttgaaaatgctgtctttttttccactagataattttagttactttgtca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  aggaccatttgttgaaaatgctgtctttttttccactagataattttagttactttgtca 35

                                             
Query: 545 aagagcaagtgactgtaggtataaaggttagttt 578
           ||||||||||||||||||||||||||||||||||
Sbjct: 34  aagagcaagtgactgtaggtataaaggttagttt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)