BAC Information

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BAC

Clone NameMSMg01-526D08
Chromosome3 (Build37)
Map Location 137,999,080 - 137,999,560
singlet/doubletsinglet
Overlap genenone
Upstream geneEmcn, EG229862, Ddit4l, LOC668874, H2afz, Dnajb14, Map2k1ip1, Dapp1, EG329763, LOC100039528, Mttp, Rg9mtd2, 4930579F01Rik, Adh7, Adh1, Adh6a
Downstream geneLOC639769, Adh4, Adh5, Metap1, EG383925, EG668879, Eif4e, EG545570, LOC668881, LOC668882, Ppia-ps3_1437.1, Tspan5, LOC620771, Rap1gds1, EG229879, B930007M17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526D08.T7 (MSMg01no526_d08.b1)MSMg01-526D08.TJ (MSMg01no526_d08.g1)
ACCAG595858AG595859
length7521,304
length of high quality
(start - end)		656 (37 - 692)---
definitionCHROMAT_FILE: MSMg01no526_d08.b1 PHD_FILE: MSMg01no526_d08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:03 2005CHROMAT_FILE: MSMg01no526_d08.g1 PHD_FILE: MSMg01no526_d08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGT
ACTTTTAAACAGAAAAAAAAGGGTGGAATTTCTTAACTAATGTAATTGTG
TCAAGTGTGAGAAACAAATGCCTCCTAATGAGCCCCTCCGTTAGGAGGAA
CCACCTCAGAATCACTTGACAGTCTGTGGAAAGGCAGTGTCCTCACAGTG
CCTGGCATTGGATGCTGCTTCTGCAGCCTCTCATTACTGTACTGTGAAGT
GAGAATCCACCCCCAACTTCCTTCAAGGTCAAACTTTGAACTTTGCAAGG
AGAATGCTCGCTTGACACAACTTCCCATAATATTATTAGGCAATTGTTTT
ACTAGCATCCTTGGCGCCTACAAATTGCAATTAAAATTGTGGTGAAATGC
CTTATCACTGCATGAGACAGGAAAGGGCTTTAGCCTTCCCTTAGTGCACT
TTCCTTTGTTGTGTTTGGCTATCATCTCTTGGAGGACTGCTCTTTTCAGA
AGGGAAACAAAGGGGAGAGGGTCTTGCGCGCGCTCGACTCGACCAGCAAG
AACGACGCTGCAACAGGATCCTTCTGCACACGTTTATTGGGAGAGCTTGA
TTGCAGAGGCGAAAAGACTTAGAGCCCAGAACTGGTGCTGCTTTTATAGG
CCTAGGAGGGGCGTGTCTCATACCCGGATTGGTTATGCACTAAGCCTCAT
TTGCATGTTCCTCATCTGATTGGCTACTCTCTCTCAGTACCTCACAGAGC
CT

GAAAGTATAATATGGNGAAGCCAAGTAGATTCNGTGCGAACAAAAGAGGG
GGGAAAGNGAGAAGGAGAAGAGAGTACCCGACAAAAGACAAGAGAGACNG
CGGANAGGCACAGACGAGGANGCCGCCAGAGCAGGAGAGAAGAGAGCCTA
GCTGAGTGAAGCGCGAACGCNAGACTAGTAGAGAGTAACGATAAGAGAGC
AATGGATACGACTAGTAAAGGCACCACACGCATGGGTGTATGTCGAGTGC
GCCCGTCTTAGGAGCATGCGAGAAGAGAGGCGAGATGAGAGAGCGAGGAG
ACCCACAGAGACTGGATTGAAGGACAAGTTAGCGAGAGAAGCGGCGAGAG
CTGTGAGAGCCGCCCAGAAGAAGGTGTCTGCGCGCAGATGGTGATTGTGC
TCGAGGCTGTAGTGCCGGCCGATTAAGCGTCCGATTTATATTAACATGCC
ACACGCGAGCGACCTCTTCTATTTGTGGGCACACACTCTACAACTCACGA
GTCACCGTTCTGCTGCGAGTGCATATATTATGTAATCTGTTACCACCGCT
TCGATCACATCNTAATATATACTGATGTGACATATTGCCGTCTGGAGAAT
AGCTTGCACCCGTCTATTCTTACCATTATAAACCGCCACACTACACCGCA
CGATATATCTATATTTTCATCCGTATCATCTTAACCTCTCACCTTCTCTA
CATATCTCGCATAATTATATTATGTCTCTCTATTCTAGACGTCCGCTATA
TAACTCCGCTGTAATCTACACAGTCATTCGCGTATAGACCATGTACTAAT
ATAGCTCATCACAGCACATGAATACTAACCGCACGCATATCAACAACATC
CACTATGTATATGCGTCAGCCGGCACTACTCTCACGCACGACGACTCTTA
CGTCGCATCGTCATAAGTAATGTTAAAAACTCTGCGTGATCTACTTGTCT
AGATCAATACACTCTACACATTCTCTGTGTATATAACCAAGCAGACAATA
TCGCNACAGTTCCTGCATTATACATAGATGCACGAGCCACATTTTGTATC
CAGACACACACTCACGTACACACATCGTTTTGTATAACCACACATGATAC
NATCGTTTCTCATGTATCACACTCACAATGTCTGTGTATAGCATCACACA
TATTCTATGGTCTATCCTCACTATATTNACACGACATCTATAAGTATAAT
CCATTATGCGACTCAGCCTATACTCACACGCTAGTATATCACCACCGCAC
TAATACACTATCACTCTATTCTCACACATCCTCTCTATTCTCCCATCTAT
CTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_d08.b1 MSMg01no526_d08.b1 CHROMAT_FILE:
MSMg01no526_d08.b1 PHD_FILE: MSMg01no526_d08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:03 2005
         (656 letters)



>mm_chr3_137998876_137999931
          Length = 1056

 Score =  907 bits (469), Expect = 0.0
 Identities = 478/481 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagtacttttaaacagaaaaaaaagggtggaatttcttaactaatgtaattgtg 64
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 205 gaattcaagtacttttaaacagaaaaaaaagggtggaatttcttatctaatgtaattgtg 264

                                                                       
Query: 65  tcaagtgtgagaaacaaatgcctcctaatgagcccctccgttaggaggaaccacctcaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcaagtgtgagaaacaaatgcctcctaatgagcccctccgttaggaggaaccacctcaga 324

                                                                       
Query: 125 atcacttgacagtctgtggaaaggcagtgtcctcacagtgcctggcattggatgctgctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 325 atcacttgacagtctgtggaaaggcagtgtcctcacagtgcctggcatcagatgctgctt 384

                                                                       
Query: 185 ctgcagcctctcattactgtactgtgaagtgagaatccacccccaacttccttcaaggtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgcagcctctcattactgtactgtgaagtgagaatccacccccaacttccttcaaggtc 444

                                                                       
Query: 245 aaactttgaactttgcaaggagaatgctcgcttgacacaacttcccataatattattagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaactttgaactttgcaaggagaatgctcgcttgacacaacttcccataatattattagg 504

                                                                       
Query: 305 caattgttttactagcatccttggcgcctacaaattgcaattaaaattgtggtgaaatgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caattgttttactagcatccttggcgcctacaaattgcaattaaaattgtggtgaaatgc 564

                                                                       
Query: 365 cttatcactgcatgagacaggaaagggctttagccttcccttagtgcactttcctttgtt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttatcactgcatgagacaggaaagggctttagccttcccttagtgcactttcctttgtt 624

                                                                       
Query: 425 gtgtttggctatcatctcttggaggactgctcttttcagaagggaaacaaaggggagagg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtgtttggctatcatctcttggaggactgctcttttcagaagggaaacaaaggggagagg 684

            
Query: 485 g 485
           |
Sbjct: 685 g 685


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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