Query= MSMg01no526_g10.b1 MSMg01no526_g10.b1 CHROMAT_FILE:
MSMg01no526_g10.b1 PHD_FILE: MSMg01no526_g10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:19 2005
(546 letters)
>mm_chr3_3268012_3268958
Length = 947
Score = 1031 bits (533), Expect = 0.0
Identities = 539/541 (99%), Gaps = 1/541 (0%)
Strand = Plus / Plus
Query: 4 ggaattctctttatt-taccttcattcttttcttctgactgtatatactctatctattct 62
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctttatactaccttcattcttttcttctgactgtatatactctatctattct 263
Query: 63 catttagcataaatatgtatatgcacatttaattcaattctctctttatttccactcaca 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 catttagcataaatatgtatatgcacatttaattcaattctctctttatttccactcaca 323
Query: 123 tacattttattgactaccaaatttgtagcatatctctgtacaacaaataactttaggatt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tacattttattgactaccaaatttgtagcatatctctgtacaacaaataactttaggatt 383
Query: 183 ttataaacttttaatcacattcattaatttaaaagaaatacttgataaaaaactataaat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttataaacttttaatcacattcattaatttaaaagaaatacttgataaaaaactataaat 443
Query: 243 caaaatttaataatgaaatagattcagtttctataccagtatcttacagaaatgtagaat 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caaaatttaataatgaaatagattcagtttctataccagtatcttacagaaatgtagaat 503
Query: 303 ttatagaaaatgaaaccaaagagccttctatcttactaaaggttcttattatgaaactgt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttatagaaaatgaaaccaaagagccttctatcttactaaaggttcttattatgaaactgt 563
Query: 363 tatgtagggttggttctgagactaggggtcctgttaaccaactggttcttgatccatcaa 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tatgtagggttggttctgagactaggggtcctgttaaccaactggttcttgatccatcaa 623
Query: 423 taaacatgctagcaatgaacaggcaggacttccaggttcccatagacaagctaacatatg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 taaacatgctagcaatgaacaggcaggacttccaggttcccatagacaagctaacatatg 683
Query: 483 caagagaacaggggtgggggtgaggggcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 caagagaacaggggtgggggtgaggggcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 743
Query: 543 g 543
|
Sbjct: 744 g 744
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 947
Length adjustment: 10
Effective length of query: 536
Effective length of database: 937
Effective search space: 502232
Effective search space used: 502232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no526_g10.g1 MSMg01no526_g10.g1 CHROMAT_FILE:
MSMg01no526_g10.g1 PHD_FILE: MSMg01no526_g10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:19 2005
(651 letters)
>mm_chr3_3491292_3492342
Length = 1051
Score = 1205 bits (623), Expect = 0.0
Identities = 644/651 (98%)
Strand = Plus / Minus
Query: 1 cagtgatatcatggtatgctccctctccccataaaaggtggcataaatccgcacatatga 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 851 cagtgatatcatggtatgctccctctccccataaaaggtggcataaatcagcacatatga 792
Query: 61 acattcaaaacagattttcctcttttgttttcctatgtgtacattttcattttctttccc 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 791 acattcaaaacagattttcctcttctgttttcctatgtgtacattttcattttctttccc 732
Query: 121 aaattgttcattgtaaaagaatgtttgtgggatgtttcataatttgaccgctagatctca 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 731 aaattgttcattgtaaaagaatgtttgtggcatgtttcataatttgaccgctagatctca 672
Query: 181 ctttgcctttcctgtaagactttttcataagtctctttgttttcatttgccccagtggtc 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 671 ctttgcctttcctgtaagactttttcataagtctttttgttttcatttgccccagtggtc 612
Query: 241 actgatctctgaaacaaagattggaagaccatgtggtcatagggagggcagagatgattc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 actgatctctgaaacaaagattggaagaccatgtggtcatagggagggcagagatgattc 552
Query: 301 ttcccccacctgccagaccagaaagagtcaccttttctcagccactctatccaccctaga 360
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ttcccccaccagccagaccagaaagagtcaccttttctcagccactctatccaccctaga 492
Query: 361 gccacacaaaatatcctatataaaagattatcagacttctccatcaaactgctctttgag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gccacacaaaatatcctatataaaagattatcagacttctccatcaaactgctctttgag 432
Query: 421 aaaggttgtgactctatttcctttacagtaaattttggagagcccttttccattgttcct 480
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 431 aaaggttgtgactctatttcctctacagtaaattttggagaggccttttccattgttcct 372
Query: 481 gtcaatacttggggattttatgaaggcaattaataaggcatgccactctgttggaacaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gtcaatacttggggattttatgaaggcaattaataaggcatgccactctgttggaacaat 312
Query: 541 gtcctcccaaggagcaggtctaagctccccaacagtcatggagaccttggcatgtctata 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gtcctcccaaggagcaggtctaagctccccaacagtcatggagaccttggcatgtctata 252
Query: 601 tcatttgaaggtctgagcccctttctgagaaaaccctgccatgtgtttcct 651
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tcatttgaaggtctgagcccctttctgagaaaaccctgccatgtgtttcct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space: 667281
Effective search space used: 667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
