BAC Information

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BAC

Clone NameMSMg01-526I21
Chromosome3 (Build37)
Map Location 37,638,094 - 37,837,197
singlet/doubletdoublet
Overlap gene4930556A17Rik
Upstream gene4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367
Downstream geneLOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824, Fat4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526I21.T7 (MSMg01no526_i21.b1)MSMg01-526I21.TJ (MSMg01no526_i21.g1)
ACCAG596120AG596121
length734735
length of high quality
(start - end)		698 (37 - 734)586 (66 - 651)
definitionCHROMAT_FILE: MSMg01no526_i21.b1 PHD_FILE: MSMg01no526_i21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:31 2005CHROMAT_FILE: MSMg01no526_i21.g1 PHD_FILE: MSMg01no526_i21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,638,094 - 37,638,787)(37,836,612 - 37,837,197)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAAT
CTCTCTTACTGATAGCTCCATCTGGTTTTAAAGCAAAGACAGCTTTATTA
GCTCACCCATTCAGGTGCTGTTGGCTGCGCGTGGTTATGATTTCATCCCT
GAAGGGTGAAGATTTACTGTTAGCAAAAGATGCTCAAAAGAATGTTCTTG
TCGTTTCCACAGGGAATTCCAATGGCTCCCAGAATGCCCTGAGCCTCCCG
TTATCTCAGTCCTTAAGGATGAAGCCCGTCTCTCAAAGTCTGCAGCAATC
TGGGAACAGCACCATCATGAAGCCCTTGAGTTTTTCTTTGTTGAGACCTT
CTGGGCCGTAGAAAATGATTCCTAACTGTGACCATCTTCTATAGATTTGA
GTTTGCTAAGCTTCTAAGGACAGCCTTTCCCCAGTGAGCCTCTGTTAGGG
CCACTTGCATAGACCCTAGCATCAGCACTATCATCCTTTTTACAGTTGGA
GCTTGGTCTGATGAGATGGTTCAGCCAGTAAAATTGCTTACCATCAAACC
TGATGACCTGAGTTCTGTCCTTGGGAGCCACACACTTCTGTAAGTGTTCT
CTGATCTCTACATCTGCACTGTGGTATGCCTCCCTCTAATAAACAAGCAA
ATAGATGTTTAAAAAATGTTTAGATCCAACAAAAGCTTTGGGAAATGCAA
CTGACTTGGGCAGTGTANGGCAGTGTCCCTTTGA

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXACAGGGGAAATGAGCCTACACTCACATTAAGGGAA
TCTATTTCCTCTAAAAGGGAAAAATAGGACAGAAATCGTTTTTCCAACTT
GATGAAAAATTCATCCTATCAGGAGTTCATGGACAGAATGGGCAAACAGA
AAACTTCTTGCATGCCAGAGGGCAGGATGCTCTGGCTTTGGAGGATGGAA
ATTGCTCTACCTGGGAAAGGCTGGTCCCCACAGTTCTGAAAGTCTATTCC
TGGGAGCTGCTGCCTGTCTTCTGAAATGTTAACTTCCCCTGGGGCTCTTT
GTTTTGTTATGTTGGCTTGTCTCCTCTCCTGTACCCCAGTCCTCCACTCA
CCCACCTCCTCCCCACCCCACACTACAACTTATAGGCTAAAAGTTTGGAC
TGAGGACTGACGGGTGAACTTATCTGGAACCATGTCTAAGTATAAGATGA
ACGTCACCTCAGCACCCTGTATAATTATGGTATTTAGCCAGCAATGTTGA
ACAGGGGCTCAAACCCATCAGGTTCTGGTTAATCTGCCTTCAGTGGCCAC
AGCTGGCCAACCGGAAGAAGACAATTGAGGAATAATGTTGTTATGTCTTA
ATAAAGATTACTGGTGTCTGAGGCAAGACCAATGTGCGGTGAACTTCTGG
CTTTGCACGCTCTGTGGAGAGATGCAGGGGTGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_i21.b1 MSMg01no526_i21.b1 CHROMAT_FILE:
MSMg01no526_i21.b1 PHD_FILE: MSMg01no526_i21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:31 2005
         (698 letters)



>mm_chr3_37637890_37638987
          Length = 1098

 Score = 1336 bits (691), Expect = 0.0
 Identities = 693/694 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaatctctcttactgatagctccatctggttttaaagcaaagacagctttatta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaatctctcttactgatagctccatctggttttaaagcaaagacagctttatta 264

                                                                       
Query: 65  gctcacccattcaggtgctgttggctgcgcgtggttatgatttcatccctgaagggtgaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctcacccattcaggtgctgttggctgcgcgtggttatgatttcatccctgaagggtgaa 324

                                                                       
Query: 125 gatttactgttagcaaaagatgctcaaaagaatgttcttgtcgtttccacagggaattcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gatttactgttagcaaaagatgctcaaaagaatgttcttgtcgtttccacagggaattcc 384

                                                                       
Query: 185 aatggctcccagaatgccctgagcctcccgttatctcagtccttaaggatgaagcccgtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatggctcccagaatgccctgagcctcccgttatctcagtccttaaggatgaagcccgtc 444

                                                                       
Query: 245 tctcaaagtctgcagcaatctgggaacagcaccatcatgaagcccttgagtttttctttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctcaaagtctgcagcaatctgggaacagcaccatcatgaagcccttgagtttttctttg 504

                                                                       
Query: 305 ttgagaccttctgggccgtagaaaatgattcctaactgtgaccatcttctatagatttga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgagaccttctgggccgtagaaaatgattcctaactgtgaccatcttctatagatttga 564

                                                                       
Query: 365 gtttgctaagcttctaaggacagcctttccccagtgagcctctgttagggccacttgcat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtttgctaagcttctaaggacagcctttccccagtgagcctctgttagggccacttgcat 624

                                                                       
Query: 425 agaccctagcatcagcactatcatcctttttacagttggagcttggtctgatgagatggt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agaccctagcatcagcactatcatcctttttacagttggagcttggtctgatgagatggt 684

                                                                       
Query: 485 tcagccagtaaaattgcttaccatcaaacctgatgacctgagttctgtccttgggagcca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tcagccagtaaaattgcttaccatcaaacctgatgacctgagttctgtccttgggagcca 744

                                                                       
Query: 545 cacacttctgtaagtgttctctgatctctacatctgcactgtggtatgcctccctctaat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cacacttctgtaagtgttctctgatctctacatctgcactgtggtatgcctccctctaat 804

                                                                       
Query: 605 aaacaagcaaatagatgtttaaaaaatgtttagatccaacaaaagctttgggaaatgcaa 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aaacaagcaaatagatgtttaaaaaatgtttagatccaacaaaagctttgggaaatgcaa 864

                                             
Query: 665 ctgacttgggcagtgtanggcagtgtccctttga 698
           ||||||||||||||||| ||||||||||||||||
Sbjct: 865 ctgacttgggcagtgtagggcagtgtccctttga 898


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space:   748544
Effective search space used:   748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no526_i21.g1 MSMg01no526_i21.g1 CHROMAT_FILE:
MSMg01no526_i21.g1 PHD_FILE: MSMg01no526_i21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:31 2005
         (586 letters)



>mm_chr3_37836412_37837397
          Length = 986

 Score = 1133 bits (586), Expect = 0.0
 Identities = 586/586 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaggggaaatgagcctacactcacattaagggaatctatttcctctaaaagggaaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 acaggggaaatgagcctacactcacattaagggaatctatttcctctaaaagggaaaaat 727

                                                                       
Query: 61  aggacagaaatcgtttttccaacttgatgaaaaattcatcctatcaggagttcatggaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 aggacagaaatcgtttttccaacttgatgaaaaattcatcctatcaggagttcatggaca 667

                                                                       
Query: 121 gaatgggcaaacagaaaacttcttgcatgccagagggcaggatgctctggctttggagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gaatgggcaaacagaaaacttcttgcatgccagagggcaggatgctctggctttggagga 607

                                                                       
Query: 181 tggaaattgctctacctgggaaaggctggtccccacagttctgaaagtctattcctggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tggaaattgctctacctgggaaaggctggtccccacagttctgaaagtctattcctggga 547

                                                                       
Query: 241 gctgctgcctgtcttctgaaatgttaacttcccctggggctctttgttttgttatgttgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gctgctgcctgtcttctgaaatgttaacttcccctggggctctttgttttgttatgttgg 487

                                                                       
Query: 301 cttgtctcctctcctgtaccccagtcctccactcacccacctcctccccaccccacacta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cttgtctcctctcctgtaccccagtcctccactcacccacctcctccccaccccacacta 427

                                                                       
Query: 361 caacttataggctaaaagtttggactgaggactgacgggtgaacttatctggaaccatgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 caacttataggctaaaagtttggactgaggactgacgggtgaacttatctggaaccatgt 367

                                                                       
Query: 421 ctaagtataagatgaacgtcacctcagcaccctgtataattatggtatttagccagcaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ctaagtataagatgaacgtcacctcagcaccctgtataattatggtatttagccagcaat 307

                                                                       
Query: 481 gttgaacaggggctcaaacccatcaggttctggttaatctgccttcagtggccacagctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gttgaacaggggctcaaacccatcaggttctggttaatctgccttcagtggccacagctg 247

                                                         
Query: 541 gccaaccggaagaagacaattgaggaataatgttgttatgtcttaa 586
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gccaaccggaagaagacaattgaggaataatgttgttatgtcttaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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