Query= MSMg01no526_j06.b1 MSMg01no526_j06.b1 CHROMAT_FILE:
MSMg01no526_j06.b1 PHD_FILE: MSMg01no526_j06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:32 2005
(614 letters)
>mm_chr3_94580756_94581770
Length = 1015
Score = 1044 bits (540), Expect = 0.0
Identities = 562/570 (98%), Gaps = 3/570 (0%)
Strand = Plus / Minus
Query: 1 cgctagggatttatcaggcttgaagacaaacagagttacatgaaaccatgtctc-aaaaa 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 570 cgctagggatttatcaggcttgaagacaaacagagttacatgaaaccatgtctcaaaaaa 511
Query: 60 aaaattacttatattctatgtgtctcaagtctttttctcatcataattatgatggcaaca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aaaattacttatattctatgtgtctcaagtctttttctcatcataattatgatggcaaca 451
Query: 120 ataatagtagagtttgttgagtgtagtttttatggcagatactgtcctgggtaatacata 179
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 450 ataatagtagaatttgttgagtgtagtttttttggcagatactgtcctgggtaatacata 391
Query: 180 atcttgtcagtggttgtgcagagtgcactaggaccttctctgatgagaagtctgaaggtc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 atcttgtcagtggttgtgcagagtgcactaggaccttctctgatgagaagtctgaaggtc 331
Query: 240 ggaggagagcgtgagagaattgctgtgacagtaagtggcagagatggaatgaaaagatgc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ggaggagagcgtgagagaattgctgtgacagtaagtggcagagatggaatgaaaagatgc 271
Query: 300 ggccactcttcccctaaaacctagacctttttatttttcctttgttttggagttgagaag 359
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 270 ggccattcttcccctaaaacctagacctttttatttttcctttgttttggagttgggaag 211
Query: 360 gcttcagaagggctggccctgaactcactgttggccaagaatgacattgaacttctaatc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gcttcagaagggctggccctgaactcactgttggccaagaatgacattgaacttctaatc 151
Query: 420 ccctttctttacctcctaaattttggattacagatgtctatgacaatgcccagtttatgc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 ccctttctttacctcctaaattttggattacagatgtctatgacaatgcccagtttatgc 91
Query: 480 agtgctggggatggaacccagggctttgtctacgctaggcaagcaccccaccatca--cc 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 90 agtgctggggatggaacccagggctttgtctacgctaggcaagcaccccaccatcaagcc 31
Query: 538 acacccccagccccatgccctttatagatg 567
||||||||||||||| ||||||||||||||
Sbjct: 30 acacccccagccccacgccctttatagatg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1015
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1005
Effective search space: 607020
Effective search space used: 607020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no526_j06.g1 MSMg01no526_j06.g1 CHROMAT_FILE:
MSMg01no526_j06.g1 PHD_FILE: MSMg01no526_j06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:33 2005
(619 letters)
>mm_chrY_1271714_1272731
Length = 1018
Score = 327 bits (169), Expect = 2e-93
Identities = 498/635 (78%), Gaps = 72/635 (11%)
Strand = Plus / Plus
Query: 1 agaaaactgcagaggttgcttactgcaagaaggtattctgcaaaagcaata---gatgat 57
||||| ||||||||| ||| |||||||| |||| |||||||||||||||| ||| ||
Sbjct: 237 agaaacctgcagaggctgcctactgcaatcaggtcttctgcaaaagcaatacacgat-at 295
Query: 58 aaa-agtactgaaatatctatcagtgctctacaatattatattctaggtgatgaaatttc 116
||| | |||||| | ||| ||||||||||||| |||||||| ||||||||| ||
Sbjct: 296 aaata--actgaattttctgtcagtgctctaca-----atattctatgtgatgaaa--tc 346
Query: 117 tctttctctctgtctctgtgtctgtgtctctgtctctatctctatgtctgtctgtctgtt 176
|| |||||| |||| |||| |||| |||| || ||| ||
Sbjct: 347 tc--tctctcaatctc----------tctc--tctc--tctc----tc--tctctc---- 380
Query: 177 tgtgtctctctttctctctctctctcaatttctacttc-tctaatacttattatgaatta 235
||||||| ||||||||||||||||| ||||| || ||||| ||||| ||||||| |
Sbjct: 381 ----tctctctctctctctctctctcaatatctac-tcttctaacacttagtatgaataa 435
Query: 236 tgattcttttatcttattccct-cca-at-gggaatgatattggaatggcatct-ctaac 291
||||||| ||||| ||| || | | || ||| |||||||||||||| ||||| | |||
Sbjct: 436 tgattctcttatc---ttctctgctacatagggcatgatattggaatgtcatctgc-aac 491
Query: 292 attcattcacattcctacacaatttgtgctttctattaacaatcaactaatatcaaagtc 351
|||||||||| ||||||| || |||||||||||| ||| ||||||||||||||||||||
Sbjct: 492 attcattcactttcctactcagtttgtgctttctcttaggaatcaactaatatcaaagtc 551
Query: 352 acacattcactcagattacaaaataagatatctgagctcatgtaaagtgatattctgaat 411
||||||||||||||||||||||||||| ||||| ||||||| ||| || |||||||| |
Sbjct: 552 acacattcactcagattacaaaataaggtatcttagctcatataac-tgttattctgagt 610
Query: 412 cagagtaggggaaggg-cacttccaatgtgtagtttcactcaagagcatggcttttaaga 470
||||| || ||| || |||||||||||||||||| ||| |||||| ||||| ||||| |
Sbjct: 611 gagagt-ggagaaaggacacttccaatgtgtagttacacccaagagtatggcctttaaaa 669
Query: 471 actggtcaattgga----agaaggtgagacaatgtatagaagagggtgtttgttttggtt 526
|||||| || | ||||| |||||| |||||||||||||| | ||| ||| ||||
Sbjct: 670 actggtaaa----acagtagaagatgagaccatgtatagaagaggttatttcttt-ggtt 724
Query: 527 tagtttggtttagctttgtttcttt-aggttacccacagtcattttaagaaacattgaga 585
| |||||||||| ||||| | ||| || |||| ||| ||||| |||||||| || ||
Sbjct: 725 tggtttggtttaattttgtctatttcag-ttacatacaatcattaaaagaaacactggga 783
Query: 586 aacactgtttatta--cctatatcttgaactgaat 618
||||| || | | | |||||||||||||||||
Sbjct: 784 aacacc--ttctcatgcatatatcttgaactgaat 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1018
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1008
Effective search space: 613872
Effective search space used: 613872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
