BAC Information

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BAC

Clone NameMSMg01-527L04
Chromosome3 (Build37)
Map Location 89,652,879 - 89,653,105
singlet/doubletsinglet
Overlap geneShe
Upstream gene5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087
Downstream geneIl6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527L04.T7 (MSMg01no527_l04.b1)MSMg01-527L04.TJ (MSMg01no527_l04.g1)
ACCAG596989AG596990
length810735
length of high quality
(start - end)		189 (53 - 241)306 (81 - 386)
definitionCHROMAT_FILE: MSMg01no527_l04.b1 PHD_FILE: MSMg01no527_l04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:02 2005CHROMAT_FILE: MSMg01no527_l04.g1 PHD_FILE: MSMg01no527_l04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTAATAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTGATTTTCTTTCCTGCACTTTTAAGATTCGTTCTTAG
CCGGGCGTGGTGGCACACGCCTTTAATCCCAGCACTCGGGAGGCAAAGGC
AGGTGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAG
GACAGCCAGAGCTATACAGAGAAACCCTGTCTGGGAAAAAACAAAATAAT
GATTTGGGACAGGGTGTTTTTTCACTGATTGTGTGGNNNNNGNTTNCNCT
TCCTTCTTTTTTTTTTCTTTTCCTCTTTTTCCATGCCCCTTCTTTTTTAC
TCTTTCTTTCTGTTTTTTTTTTAAAAACATTCTCCTTTTCCCCACATAAA
TTTTTTTTTTCTCCTCCCTTTTTTTTCCTCTCCCCCTCTTTACCTCTATT
TTTTTTTATTCCCTTATTCTCATACCCCCTCCTCTTTTTCCCCCTTTTTT
GTTTTTACCTTTTTCTTGTTATTTTTATATATTTTCTCTTTTTCTCTTTT
AATCACTAATTACATTATTTGCCCTACTTCTCTTTCACTCGTACTTCTGT
TTATTGTTTTTATCTTCTTTGTTTCTCGCTCTTTTTTTTTCCATCCTCTT
TTTCTCCTAAAAACTAATGTGTTGTATCACATTATATCTATATCGCTCTG
ATTTGTTTTTTTTTTCTTCTCCCATTTTCGTTCCTCCACTATTTTGGAGG
CGACTTTTTTTATTTTTATTTGGGATTATTTATTTACGCTTTGTTTTTTT
GCTCACCCTG

TTTTTTTCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGGC
CTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAA
GGCGTGCGCCGCCGCCACCACCACCCGGCCCCAGGTGTTTTCTTCTTAAA
TGTGTCGTTTTAGAGTTGACACTCAGCAACTGTACAGACCATCTGAGGAC
TGTGATATTTCAGTTTGTGTGCATGTTGTGCAGTAGCCAGGAACATTCTG
GAACACACACACACACACACACTCTTTCTCACACACACACACACACACAC
ACCCTGCCCTTTTGCTTCTGTATCATGGCCGAAGAGTAGTCTGCCTTACC
CAGAACACTACAGTCTCACACCATTTTTGCTGCCTCAGCCAAGGGTAACT
GTGTGGGCCTTATGACATCTGTCCATGACCATTTGAGGTGCTCCATGTGA
CCTGTATGCCTGATTTTCAGAAATCAGACGCCGTGGTTCCAAAGATCCCC
TGGTGAAGGCCCTCCAGTTGCTTGATGGCCCGAGTGAACCATGGGAGACT
GTTGAATGTGGAGGTCTCTCTCAAGATACGCTGCTCCAAGGACCTGCTGT
GTAAGCCGCCACAACTCTATGACACTCCGTACGATCCTTCTTAGGGTGTT
TCACGTGTGTTTATATTTTACGCGCGGCCTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_l04.g1 MSMg01no527_l04.g1 CHROMAT_FILE:
MSMg01no527_l04.g1 PHD_FILE: MSMg01no527_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:02 2005
         (306 letters)



>mm_chr3_89652670_89653375
          Length = 706

 Score =  381 bits (197), Expect = e-110
 Identities = 223/237 (94%), Gaps = 11/237 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   actctgtagaccaggctggcctcgaactcagaaatccacctgcctctgcctcccgagtgc 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 210 actctgtagaccaggctgtcctcgaactcagaaatccacctgcctctgcctgccgagtgc 269

                                                                       
Query: 61  tgggattaaaggcgtgcgccgccgccaccaccacccggccccaggtgttttcttcttaaa 120
           ||||||||||||||||||||         |||||||||||||||||||||||||||||||
Sbjct: 270 tgggattaaaggcgtgcgcc---------accacccggccccaggtgttttcttcttaaa 320

                                                                       
Query: 121 tgtgtcgttttagagttgacactcagcaactgtacagaccatctgagg-actgtgatatt 179
            ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 321 cgtgtcgttttagagttgacactcagcaactgtacagaccatct-agggactgtgatatt 379

                                                                    
Query: 180 tcagtttgtgtgcatgttgtgcagtagccaggaacattctggaacacacacacacac 236
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcagtttgtgtgcatgttgtgcagtagccaggaacattctggaacacacacacacac 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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