Query= MSMg01no528_f18.b1 MSMg01no528_f18.b1 CHROMAT_FILE:
MSMg01no528_f18.b1 PHD_FILE: MSMg01no528_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:56 2005
(675 letters)
>mm_chr3_111034571_111035645
Length = 1075
Score = 1268 bits (656), Expect = 0.0
Identities = 668/672 (99%), Gaps = 2/672 (0%)
Strand = Plus / Plus
Query: 5 gaattcagttaaactaagtataagagtgtaactgctgtcttctggatattccatgggcat 64
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 205 gaattcagttaaactaagtataagagtgtaactgctatcttctggatattccatgggcat 264
Query: 65 tgcaatcataaatacaaagaagcagcattcccccaaatgtatggaacaagaaataaacca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgcaatcataaatacaaagaagcagcattcccccaaatgtatggaacaagaaataaacca 324
Query: 125 attccaaaaataaaataacatgaatggtcaagaagtggaaaggaaaaagcagataattgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attccaaaaataaaataacatgaatggtcaagaagtggaaaggaaaaagcagataattgt 384
Query: 185 ataggaacgatgctacaaaaaataggaaggaggttggtaagagaaactgccatgataata 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataggaacgatgctacaaaaaataggaaggaggttggtaagagaaactgccatgataata 444
Query: 245 ttgaacagtgatagtaacaaaactgtatggcaagtgtgaccttgttaaccttatattaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgaacagtgatagtaacaaaactgtatggcaagtgtgaccttgttaaccttatattaaa 504
Query: 305 aattattaattaaaatattggggcattttaaaagctgagtaga-aaaaagtaaagaattg 363
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 505 aattattaattaaaatattggggcattttaaaagctgagtagataaaaa-taaagaattg 563
Query: 364 attttgtatgtttgtacatagatgcatattataaagatagaaaaattaaagataaataga 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 564 attttgtatgtttgtacatagatgcatattataaagatagaaaaattaaagatagataga 623
Query: 424 tagatgataggcagatagatcaatagatagctagatatatagatttccttgaataaaata 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tagatgataggcagatagatcaatagatagctagatatatagatttccttgaataaaata 683
Query: 484 aaggagatattttcccttcatggttttgtaacaagtaacaaaggatttttaaatgatatt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aaggagatattttcccttcatggttttgtaacaagtaacaaaggatttttaaatgatatt 743
Query: 544 tctccatgtatcaattgcatgtaggtttattgtctaattataatttaatataactatcaa 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tctccatgtatcaattgcatgtaggtttattgtctaattataatttaatataactatcaa 803
Query: 604 ataccaataatatagcacacaagtaaatatttatgtatatgtagaaactagagatacatt 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ataccaataatatagcacacaagtaaatatttatgtatatgtagaaactagagatacatt 863
Query: 664 ttgcatgttttg 675
||||||||||||
Sbjct: 864 ttgcatgttttg 875
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space: 708225
Effective search space used: 708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_f18.g1 MSMg01no528_f18.g1 CHROMAT_FILE:
MSMg01no528_f18.g1 PHD_FILE: MSMg01no528_f18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:56 2005
(507 letters)
>mm_chr3_111175122_111176027
Length = 906
Score = 837 bits (433), Expect = 0.0
Identities = 493/523 (94%), Gaps = 17/523 (3%)
Strand = Plus / Minus
Query: 1 aatattgtttagaacagtcattctcagtaagcaagacacagagacaccacaagaggatgg 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 633 aatattgtttagaacagtcattctcagtaagcaagacacagagactccacaagaggatgg 574
Query: 61 atgatccaatttgtagaaaggtagacatgtataaaccaataaacactcatgcaactaggc 120
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 573 atgatccaatttgcagaaaggtagacatgtataaaccaataaacactcatgcaagtaggc 514
Query: 121 agttaggtgctgggaaatctacagcaggaaacttttgtgcaccaaaagtttaattaaaca 180
||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 513 agttaggtgttgggagatctacagtaggaaacttttgtgcaccaaaagtttaattaaaca 454
Query: 181 tttctggaggtaagtggtatttttcttgagaactccgtatacgagttttcttgagaaaga 240
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 453 tttctggaggtaagtggtatttttcttgagaactccgtatatgagttttcttgagaaata 394
Query: 241 agttcagtttacatcagaaaggggcagtatcaaacgtcaaggtcatgtacaagcaggaac 300
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 393 agttcagtttatatcagaaaggggcagtatcaaacgtcaaggtcatgtactagcaggaac 334
Query: 301 agtgaaggaagctaaatgatcaacagcacaaggtgagtcaaagaataaccagtgataatt 360
|||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||| ||
Sbjct: 333 agtgaaggaagctaaatgatcaacagcacaagctgagtcagagaataaccaatgata-tt 275
Query: 361 cacagttttgacttaaaagcaaggaattcttaaacaactgcgcagaaacatgcaaattta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 cacagttttgacttaaaagcaaggaattcttaaacaactgcgcagaaacatgcaaattta 215
Query: 421 acataaaactgatggtatgtttgcatgtgtgtatat----------------atgaatgt 464
|||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 214 acataaaactgatggtatgtttgcatgtgtgtatatttgtttttaagtatatatgaatgt 155
Query: 465 acatatgtacatatgtatgtaaataaataatggacaaaaatgt 507
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 acatatgtacatatgtatgtaaataaataatggacaaaaatgt 112
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 906
Length adjustment: 10
Effective length of query: 497
Effective length of database: 896
Effective search space: 445312
Effective search space used: 445312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
