Query= MSMg01no528_j12.b1 MSMg01no528_j12.b1 CHROMAT_FILE:
MSMg01no528_j12.b1 PHD_FILE: MSMg01no528_j12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:14 2005
(680 letters)
>mm_chr3_5531988_5533067
Length = 1080
Score = 801 bits (414), Expect = 0.0
Identities = 439/452 (97%), Gaps = 8/452 (1%)
Strand = Plus / Minus
Query: 5 gaattcatatacactatcatgctaaaggcctattaggatttcatctaggatatttcacat 64
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 444 gaattcatatgcactatcatgctaaaggcctattaggatttcatctaggatgtttcacat 385
Query: 65 tcaagaaagattttaagccaaagatattttctgcttataataaaaacaatcaaattagaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcaagaaagattttaagccaaagatattttctgcttataataaaaacaatcaaattagaa 325
Query: 125 aatattaggcaggtgtacaaatataaatcatgagatttatgatgctgttactttattcta 184
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 actattaggcaggtgtacaaatataaatcatgagatttatgatgctgttactttattcta 265
Query: 185 gcaatttctaaaatggtattctttttacacaaaggagtcacatcctgcctctttcatggc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcaatttctaaaatggtattctttttacacaaaggagtcacatcctgcctctttca---- 209
Query: 245 cagttggcttttggttatggaatttctgtcagtaacatttatcagtacttataaaatcat 304
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 208 ----tggcttttggttatggaatttctgtcagtaacatttatcaatacttataaaatcat 153
Query: 305 agatttaattttctcaatgttcccttttatttttattttatttatataggtatttcactt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 agatttaattttctcaatgttcccttttatttttattttatttatataggtatttcactt 93
Query: 365 ccatgtttgtttgtgtatcatgtgcatccatggtgcctgaagaggtaagaagaatgtatc 424
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ccatgtttgtttgtgtatcatttgcatccatggtgcctgaagaggtaagaagaatgtatc 33
Query: 425 acatgccttggaactggagttcagacagttgt 456
||||||||||||||||||||||||||||||||
Sbjct: 32 acatgccttggaactggagttcagacagttgt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space: 716900
Effective search space used: 716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_j12.g1 MSMg01no528_j12.g1 CHROMAT_FILE:
MSMg01no528_j12.g1 PHD_FILE: MSMg01no528_j12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:14 2005
(640 letters)
>mm_chr3_5340639_5341678
Length = 1040
Score = 1170 bits (605), Expect = 0.0
Identities = 632/641 (98%), Gaps = 2/641 (0%)
Strand = Plus / Plus
Query: 1 ttcagctacagaagctcactaccttttggattcccaagaaaaaatttgagcatctcccca 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 ttcagctacagaagctcactaccttttggattcccaagagaaaatttgagcatctcccca 260
Query: 61 gactgacttgagcacattggatggacggctgtgtcctccttggttgagtaataaatagta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactgacttgagcacattggatggacggctgtgtcctccttggttgagtaataaatagta 320
Query: 121 gctcaaccagaaaagaatgtttaaaggggctgagaggcacctgccattcatatttaaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctcaaccagaaaagaatgtttaaaggggctgagaggcacctgccattcatatttaaaca 380
Query: 181 aaagataatagaaaaaaaaactcttgttagactgctttttaaaaggacggatgtaaaaaa 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagataatagaaaaaaaaactcttgttagactgctttttaaaaggacggatgtaaaaa- 439
Query: 241 caatttagataagtttttctgcttaatatttaatattgctaaaacaatgacaatttagaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 caatttagataagtttttctgcttaatatttaatattgctaaaacaatgacaatttagaa 499
Query: 301 agaaattgataaaacattgggctaaaattagcacaaaaaa-ttatcctcttcactttggg 359
|||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||
Sbjct: 500 agaaattgataaaacattcacctaaaaatagcacaaaaaaattatcctcttcactttggg 559
Query: 360 caaaataagtcttttccttgatattcaatcaagtgctttccaatcatcaaataagacttt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 caaaataagtcttttccttgatattcaatcaagtgctttccaatcatcaaataagacttt 619
Query: 420 ttctgaattacttgattgtgcaagtctcattatgtgttccaaggtccacattggatgaat 479
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttctgaattacttgcttgtgcaagtctcattatgtgttccaaggtccacattggatgaat 679
Query: 480 atgttcattatagggaatggagaagcactctagtagttttctatgtgaaagtagatttcc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atgttcattatagggaatggagaagcactctagtagttttctatgtgaaagtagatttcc 739
Query: 540 tgtgttttaaagtaggaagctctttctataattaggactattcatttgcagtttgacaag 599
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 740 tgtgttttaaagtaggaagctctttctataattaggactatgcatttgcagtttgacaag 799
Query: 600 gtctttaaaaaaagtttgaataccaaagctgtaggtcagat 640
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 gtctttaaaaaaagtttgaataccaaagctgtaggtcagat 840
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space: 648900
Effective search space used: 648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
