BAC Information

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BAC

Clone NameMSMg01-529M20
Chromosome3 (Build37)
Map Location 6,711,220 - 6,711,865
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667759, LOC100041165, LOC100041193, EG620570, LOC100041214, LOC383818, 1700008P02Rik, LOC100039349
Downstream geneOlfr289-ps1, EG667801, Pkia, LOC667807, 3110050N22Rik, Il7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529M20.T7 (MSMg01no529_m20.b1)MSMg01-529M20.TJ (MSMg01no529_m20.g1)
ACCAG598597AG598598
length773770
length of high quality
(start - end)
650 (44 - 693)470 (72 - 541)
definitionCHROMAT_FILE: MSMg01no529_m20.b1 PHD_FILE: MSMg01no529_m20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:54 2005CHROMAT_FILE: MSMg01no529_m20.g1 PHD_FILE: MSMg01no529_m20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTC
TGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTA
TCTGATTTAGGTTAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTT
TGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTA
GGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTG
TTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTT
CTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTGATCC
ATTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCACATT
CTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCT
GTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGAC
CATAGGTGTGTGGGTTCATTTCTGGGTCTTAAATCAGGTTCAAACAACAG
GAAACAGAACCAAAATAGGTGTACCTGTTAATAATGAATAATGTCTATAT
TCAAAGACAAAGATATCAGAATTTCTATGTTTGTCATTAAACCAAAGCAT
TCACAATAATAAAGTGTAGTTTAGTAGTGCACTGGCATACATTCATGAGA
TGCTGAGTCCAGAGCTGCTAACN
TTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGGGATGAAAATGGTGAGGATCCTGAGG
AATAAAGGTCCAGCAACAGGCCCAAAGTGGGATCCAGCACAAGGGGAGGT
CCCAAGGCCAGACAGTATTACTGAGGCTGTGAAACACTCACAAGAGGGCA
CTCCAGAAGACCCAACAGGCTGCTGAAAGAGTCAGATGCAGATATTTGCA
TTTGTCCAAGCAATGGACAGAAGCTTCTGATCTCCCGAATTATGGAAAAG
CTGGCAGAAACTGAGGAGGAAGGTGACCCTGCAGGAGGACCAGCATTCTC
AAATAACCTGGATCCCTGAAATCTCTCAAACAGTGGACCACTGACTTGGC
AACATACACTAGGTGATATGAGGCTACCAACACTTATACAGCAGAGGACT
GGCAGGTCTGGGTTCAGTCAGAGAAGATGCACCTAACCGTCAACCGACTG
GAAGTCCCAGGGAGTTTAGAGGTTTGTTTGGGTGTGGGATGGGTGAGTGG
GAGTACTAAATCCCACTGTGGCATCTTTACTCCCATGTAAGGAGTCGCTG
TGGGGTGGAAGCAGAATGGCTTGCGGTTACACAGAAAAGTCCTAGTTTGA
AAAACAACAAACAGCCATGTCTTCCCAGCACTTGTGAGGCATAGGTAGGC
GGATTTCTGAGCTTGATGCCAGCTCAGTCTATAGAGTGAGTTCTAGGATA
GCCAGTGTATTTATAGTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_m20.b1 MSMg01no529_m20.b1 CHROMAT_FILE:
MSMg01no529_m20.b1 PHD_FILE: MSMg01no529_m20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:54 2005
         (650 letters)



>mm_chr3_6711016_6712065
          Length = 1050

 Score = 1218 bits (630), Expect = 0.0
 Identities = 642/646 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgttcagttctgagccccattttttaatggggttatttgattttctgaagtc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgttcagttctgagccccattttttaatggggttatttgattttctgaagtc 264

                                                                       
Query: 65  caccttcttgagttctttatatatgttggatattagtcccctatctgatttaggttaggt 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 265 caccttcttgagttctttatatatgttggatattagtcccctatctgatttaggataggt 324

                                                                       
Query: 125 aaagatcctttcccaatctgttggtggtctttttgtcttattgacggtgtcttttgcctt 184
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 325 aaagatcctttcccaatctgttggtggtctttttgtcttattgacagtgtcttttgcctt 384

                                                                       
Query: 185 gcagaaactttggagtttcattaggtcccatttgtcaattctcgatcttacagcacaagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcagaaactttggagtttcattaggtcccatttgtcaattctcgatcttacagcacaagc 444

                                                                       
Query: 245 cattgctgttctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cattgctgttctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac 504

                                                                       
Query: 305 tttctcctctataagtttcagtgtctctggttttatgtgaagttctttgatccatttaga 364
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 505 tttctcctctataagtttcagtgtctctggttttatgtgaagttccttgatccacttaga 564

                                                                       
Query: 365 tttgaccttagtacaaggagataagtatggatcgattcacattcttctacacgataacaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttgaccttagtacaaggagataagtatggatcgattcacattcttctacacgataacaa 624

                                                                       
Query: 425 ccagttgtgccagcaccaattgttgaaaatgctgtctttcttccactggatggttttagc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccagttgtgccagcaccaattgttgaaaatgctgtctttcttccactggatggttttagc 684

                                                                       
Query: 485 tcccttgtcgaagatcaagtgaccataggtgtgtgggttcatttctgggtcttaaatcag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tcccttgtcgaagatcaagtgaccataggtgtgtgggttcatttctgggtcttaaatcag 744

                                                                       
Query: 545 gttcaaacaacaggaaacagaaccaaaataggtgtacctgttaataatgaataatgtcta 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gttcaaacaacaggaaacagaaccaaaataggtgtacctgttaataatgaataatgtcta 804

                                                         
Query: 605 tattcaaagacaaagatatcagaatttctatgtttgtcattaaacc 650
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tattcaaagacaaagatatcagaatttctatgtttgtcattaaacc 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)