Query= MSMg01no530_l08.b1 MSMg01no530_l08.b1 CHROMAT_FILE:
MSMg01no530_l08.b1 PHD_FILE: MSMg01no530_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:07 2005
(635 letters)
>mm_chr3_130381277_130382302
Length = 1026
Score = 1102 bits (570), Expect = 0.0
Identities = 591/602 (98%), Gaps = 9/602 (1%)
Strand = Plus / Plus
Query: 1 tcggcttcctagtctgcacactgttcccctgacttttgccaccaccacaggaacggagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcggcttcctagtctgcacactgttcccctgacttttgccaccaccacaggaacggagtc 260
Query: 61 ctggcttctccagtacctacgctcgggcaattttgaaagccacagcacagggtgctcgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggcttctccagtacctacgctcgggcaattttgaaagccacagcacagggtgctcgct 320
Query: 121 agattttattttccttttcttcctctcaccatttcttctaaggcgactttcttgtcttga 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 agattttattttccttttcttcctctcaccatttcttctaaggcgactttctcgtcttga 380
Query: 181 ggtctatgatacaggttcaaaacggcggtgattaatagacttgaattcattcttatactc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtctatgatacaggttcaaaacggcggtgattaatagacttgaattcattcttatactc 440
Query: 241 tcgcaggagtcaacacaagatttatttatatttgagctatgtctacaattttcctcaaat 300
||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcgcaggagtcaa------at--atttatatttgagctatgtctacaattttcctcaaat 492
Query: 301 ctccctgtctccatttgcctactgtagagaatggaaatctcatcaaattcttgccgaccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ctccctgtctccatttgcctactgtagagaatggaaatctcatcaaattcttgccgaccc 552
Query: 361 cacaagggtaatataaaggttaatgaggcaatttcccagcagttcctggagtgctgagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cacaagggtaatataaaggttaatgaggcaatttcccagcagttcctggagtgctgagag 612
Query: 421 tggatgaatactgggattgctgaggactttcagtgcttataaaagacagacgtttccccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tggatgaatactgggattgctgaggactttcagtgcttataaaagacagacgtttccccc 672
Query: 481 agtccattagataagaattcttaattttgattttttttttagatcaaattttttgaatgt 540
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 673 agtccattagataagaattcttaattttgaatttttttt-agatcaaattttttgaatgt 731
Query: 541 agtttcttttgccttcaccttttttgtgatctctctctctctctctctctctctctctct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 agtttcttttgccttcaccttttttgtgatctctctctctctctctctctctctctctct 791
Query: 601 ct 602
||
Sbjct: 792 ct 793
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1026
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1016
Effective search space: 635000
Effective search space used: 635000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no530_l08.g1 MSMg01no530_l08.g1 CHROMAT_FILE:
MSMg01no530_l08.g1 PHD_FILE: MSMg01no530_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:07 2005
(653 letters)
>mm_chr3_130583292_130584345
Length = 1054
Score = 1187 bits (614), Expect = 0.0
Identities = 644/654 (98%), Gaps = 1/654 (0%)
Strand = Plus / Minus
Query: 1 tgtcttttaaaactgatttaggtgtgcatgtgggcatgtgtgtgcagcgggtgcacccgt 60
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 854 tgtcttttaaaactgatttaggtgtgcatgtgggcatgtgtgtgcggcgggtgcacacgt 795
Query: 61 gtgtgcatatgtgatcaaaaggcagtagagcttaatgtttctgagacgactcccaaataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 gtgtgcatatgtgatcaaaaggcagtagagcttaatgtttctgagacgactcccaaataa 735
Query: 121 agaggaacagaaggaaaatatcagtcaaaagggcttctttacagcatctctcaggcacaa 180
| ||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 734 aaaggaagagaaggaaaatatcagtcaaaaaggcttctttacagcatctctcagggacaa 675
Query: 181 acgacagctttagcagattttcaatctagctcctgtttgcattgtcaatacttatgtcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 acgacagctttagcagattttcaatctagctcctgtttgcattgtcaatacttatgtcat 615
Query: 241 gatatactcccccaccccccaaagcaggaactctggacccatcaggtcagagcttgggcc 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gatacactcccccaccccccaaagcaggaactctggacccatcaggtcagagcttgggcc 555
Query: 301 tggtattaactactcaccctgaacaagtacccttccctccatggctttttgttattcctc 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 554 tggtattaactactcaccctgaacaagtacccttccctccctggctttttgttattcctc 495
Query: 361 agagaagaaacaatcagacagactttcaccgtcgttgcgaattttaaataaggttttgtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 agagaagaaacaatcagacagactttcaccgtcgttgcgaattttaaataaggttttgtg 435
Query: 421 tacatcagcaggctgggcccacttggaacttaaaagtgaatgaacaataatttttagccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tacatcagcaggctgggcccacttggaacttaaaagtgaatgaacaataatttttagccc 375
Query: 481 tcctcccttcctatgggaaacccatcaaacctgacttggctggtctctgcccaagggtgc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tcctcccttcctatgggaaacccatcaaacctgacttggctggtctctgcccaagggtgc 315
Query: 541 agtggcaccccctgttggcagaggcagacagctttgcagctctcagcaacaaagtgctca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 agtggcaccccctgttggcagaggcagacagctttgcagctctcagcaacaaagtgctca 255
Query: 601 ctggaggttttttttc-tgtctttcagtgtcatctggctactgtgatctacttg 653
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 254 ctagaggttttttttcctgtctttcagtgtcatctggctactgtgatctacttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1054
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1044
Effective search space: 671292
Effective search space used: 671292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
