Query= MSMg01no531_g14.b1 MSMg01no531_g14.b1 CHROMAT_FILE:
MSMg01no531_g14.b1 PHD_FILE: MSMg01no531_g14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:01 2005
(634 letters)
>mm_chr3_152253461_152254497
Length = 1037
Score = 1077 bits (557), Expect = 0.0
Identities = 613/633 (96%), Gaps = 3/633 (0%)
Strand = Plus / Plus
Query: 5 gaattcccggagcttgactctggcaaataaacattttagcaaaagacagttttaaaagta 64
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 205 gaattcccggagctggactctggcaaataaacattttagcaaaagacagtttaaaaagta 264
Query: 65 gagaccaaatgtaattctttagataagatctcactatgtagctcaggctgaccttgaact 124
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagacgaaatgtaattctttagataagatctcactatgtagctcaggctgaccttgaact 324
Query: 125 cttggctattccgcctcagcctcacagtgacgtggtggtttctgtctggcatgccatttc 184
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 325 cttggctattccacctcagcctcacagtgatgtggtggtttctgtctggcatgccatttc 384
Query: 185 tgtcttctcctggatagccatcttttatactcactgactctcatccccatctgtggtggc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtcttctcctggatagccatcttttatactcactgactctcatccccatctgtggtggc 444
Query: 245 caccacatccagatgtatttcagggttcaagacaacgaggcaaaggtcatgcagagtgca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caccacatccagatgtatttcagggttcaagacaacgaggcaaaggtcatgcagagtgca 504
Query: 305 taagctttgttcctggcacagaatctcaagccggcagcaatttagacttgaacattgtgc 364
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 505 taagctttgttcctggcacagaatctcaagttggcagcaatttagacttgaacattgtgc 564
Query: 365 gttagaacaacctcttcatttaataatataaagtggactttcattgtggatatgcttttt 424
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 565 gttagaacaatctcttcatttaataatataaagtggactttcattgtggatatgtttttt 624
Query: 425 ctgatgaccagcaaaatggctttctagtgtgcttgttaccaatttccatttctactttga 484
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 625 ctgatgaccagcaaaatagctttctagtgtgcttgttaccaattttcatttctactttga 684
Query: 485 aaggactcttattgacttgatttgaataaatttaccactgaagctacttagaaaattaaa 544
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 685 aaggactcttattgacttgatttgaataaatttcccactgaagctacttagaaaattaaa 744
Query: 545 ggttacatgattcataatttagttattcaattaaatttttaatccatttttttta---ag 601
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 745 ggttacatgattcataatttagttattcaattaaatttttaatccattttttttttttag 804
Query: 602 cactggcaatagaacccagggcctcatgcagac 634
|||||||||||||||||||||| |||||||
Sbjct: 805 tgctggcaatagaacccagggccttgtgcagac 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1037
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1027
Effective search space: 640848
Effective search space used: 640848
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no531_g14.g1 MSMg01no531_g14.g1 CHROMAT_FILE:
MSMg01no531_g14.g1 PHD_FILE: MSMg01no531_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:01 2005
(672 letters)
>mm_chr3_152423554_152424625
Length = 1072
Score = 1085 bits (561), Expect = 0.0
Identities = 654/729 (89%), Gaps = 67/729 (9%)
Strand = Plus / Minus
Query: 1 tttctctcttgaagattatttatgttggctttcctgggattagtaatggccattaatctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 tttctctcttgaagattatttatgttggctttcctgggattagtaatggccattaatctg 790
Query: 61 gagttggatcaaggagatgagctaatttacaagggagagttttcagttcaagagcgccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gagttggatcaaggagatgagctaatttacaagggagagttttcagttcaagagcgccct 730
Query: 121 cttctgtagccgaaacgaactgcagcttacttaataaagtagccggtgtagcggggtggg 180
|||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 729 cttctgtagctgaaacgaactgcagcttacttaataaagtagccgatgtaccggggtggg 670
Query: 181 atttttaaatactcccttgctttcataaagcccttccttactctttttgtccacatctaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 atttttaaatactcccttgctttcataaagcccttccttactctttttgtccacatctaa 610
Query: 241 cacttctgggcaccgtgtccccaccgtcctcttcacaacgtcctctgttctcatagaatt 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 609 cacttctgggcaccgtgtccccaccctcctcttcacaacgtcctctgttctcatagaatt 550
Query: 301 gtcgctttcctaatcatggtgcataaggtcaccaagctctctactcagcatttgtaattc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gtcgctttcctaatcatggtgcataaggtcaccaagctctctactcagcatttgtaattc 490
Query: 361 tgagaaaactacaggtgctcattccaacttacgcatggctggaaccccaaacacctcctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tgagaaaactacaggtgctcattccaacttacgcatggctggaaccccaaacacctcctt 430
Query: 421 ttttcctcttatgaataatgtgtgttctccttcttaaggtcattcttttacttaagattt 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ctttcctcttatgaataatgtgtgttctccttcttaaggtcattcttttacttaagattt 370
Query: 481 tgag-------------------------------------------------------- 484
||||
Sbjct: 369 tgagagctctaagacactcactggctccagaggttatctctccattttctctttccaaga 310
Query: 485 -----------agctctactgacagcatttcatgaaggaacaatttctgcacaggaggct 533
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ctgggctaagaagctctactgacagcatttcatgaaggaacaatttctgcacaggaggct 250
Query: 534 gtgccgtttttccttgtgtcactgtgtctcagacaatggcatttcacagatacaagccga 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gtgccgtttttccttgtgtcactgtgtctcagacaatggcatttcacagatacaagccga 190
Query: 594 gtctcttcactgtgaaagggttctgaatccagcacagcaaagctacaatctgtgctgaaa 653
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 189 gtctcttcactgtggaagggttctgaatccaacacagcaaagctacaatctgtgctgaaa 130
Query: 654 gtgactaaa 662
|||| ||||
Sbjct: 129 gtgattaaa 121
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space: 703044
Effective search space used: 703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
