BAC Information

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BAC

Clone NameMSMg01-531K05
Chromosome3 (Build37)
Map Location 36,270,421 - 36,270,800
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665655, Ube2l3-ps1, LOC625963, Atp11b, LOC665667, Dcun1d1, Mccc1, BC050811, Acad9, D3Ertd254e, Gpr103
Downstream geneAnxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531K05.T7 (MSMg01no531_k05.b1)MSMg01-531K05.TJ (MSMg01no531_k05.g1)
ACCAG599989AG599990
length742744
length of high quality
(start - end)
382 (84 - 465)602 (84 - 685)
definitionCHROMAT_FILE: MSMg01no531_k05.b1 PHD_FILE: MSMg01no531_k05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:19 2005CHROMAT_FILE: MSMg01no531_k05.g1 PHD_FILE: MSMg01no531_k05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCATATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCACACATTTCTTCAACACATGGATGCATACACACATA
CATGAATGCACACACAGATACACATGCATGTGCATACACACACAAATGCA
TGACCTATGCACACACACATGGATGCATACACACACATAGAGACACAACT
GGATACCCACACACATGGATGCACACGCACAGACACACACTCACAGAAAC
ACATCTAGATAAAGATGCACATGCATACCCACACACATGGATGCATACAC
ATACATGCATGGCTTGGTTTGAGCTATCATTTGGTGGGTTCTCTTTGTTT
TGCCTTGGACAATTCTGAGGTGACATGCAAATGGATAGAATGAAGACTTT
TTCGTAGTCTACCTGCTAGACAGCATCCACAGGGAACAAACTGCTCTTTA
GCTATGACAAATAGACGCTTATAGAGTACAAACGAATGTCTTATGCTAAC
AGCCTTTTTCTCTCTTTGATTCATCAAAACTTGCTAAGACTGTTCCTTCT
TTGCCAATGATTTCTATACTAATATCCCGCCAGCGTTATACCCCTGAGAT
ATTGTTTTTAAATATCCCTTTTGCACTTTTCTTCTCCATATCCACTTATT
GCTCAACCAACACAGACTTTTGTATGAGATCACACACCCAGATGTGATTT
GGAAACTGTTAATATGTCACCATTTTCTCACTATTTCTTCTN
CCCCATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCAAAGGAATGGCT
GAGATGCACTTAAAGAAATGTTCAATATCCTTAGTCATCGGGGTAATTCA
AATCAAAGACTCTGAGATTTCATCTTACAGCCACCAGACTGGCTAAGATC
AAAAACTCAAGTGACAGCTCATGCCGGCAAGAATGTGGAGCAAGGGGACA
TTCCTCCAGTACTGGTGGGCAAATAAACTCATGCAACCACTTTGAAAATC
AATTTGGCAGTTTCTCAGAAACTGGGAATAGTTCTACCTCAAAACCAAGC
TGGTCTAAAAGATGCCTCACCAAACCACAAGGGCACTTGCTCCATTATGT
TCATAGCAGCTTTGTTCATAATAGCCAGAGACTGGAAACAATCTGCATGT
CCCTCAACTGAAGAATGGCTAAAAAAAATGTGATTCATTTACACAATGAG
ATGCTACTCAGCTATTAAAAACAAGGACACCATGAAATTTGTAGGCAAAT
GGATGGAACTAGAAAATATTCTGAGTAAAGTTACCCGGACCCAGACCTGT
CTCTGGTCTCTCCTCTGTCCCCAGTGTTCCTAGCCAGCCTCTTCTTCCTC
TGTCTCTGTCTCTGTCTCTCTGCCTCTCTCTCTGTCTTTCTGTCTCACTC
TGTTTCTGTCTGCTTGTCCGCCTCTTAATTTCTCTCTGTGCGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_k05.b1 MSMg01no531_k05.b1 CHROMAT_FILE:
MSMg01no531_k05.b1 PHD_FILE: MSMg01no531_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:19 2005
         (382 letters)



>mm_chr3_36270051_36270832
          Length = 782

 Score =  677 bits (350), Expect = 0.0
 Identities = 371/380 (97%), Gaps = 4/380 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggatgcatacacacatacatgaatgc----acacacagatacacatgcatgtgcatacac 56
           ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||
Sbjct: 750 ggatgcatacacacatacatgaatgcacaaacacacagatacacatgcatgtgcatacac 691

                                                                       
Query: 57  acacaaatgcatgacctatgcacacacacatggatgcatacacacacatagagacacaac 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 acacaaatgcatgacctatgcacacacacatggatgcatacacacacatagagacacaac 631

                                                                       
Query: 117 tggatacccacacacatggatgcacacgcacagacacacactcacagaaacacatctaga 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tggatacccacacacatggatgcacacgcacagacacacactcacagaaacacatctaga 571

                                                                       
Query: 177 taaagatgcacatgcatacccacacacatggatgcatacacatacatgcatggcttggtt 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 taaagatgcacatgcatacccacacacatggatgcatacacatacatgcatggcttggtt 511

                                                                       
Query: 237 tgagctatcatttggtgggttctctttgttttgccttggacaattctgaggtgacatgca 296
           ||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tgagctatcaggtggtggtttctctttgttttgccttggacaattctgaggtgacatgca 451

                                                                       
Query: 297 aatggatagaatgaagactttttcgtagtctacctgctagacagcatccacagggaacaa 356
           |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aatggagagaacgaagactttttcgtagtctacctgctagacagcatccacagggaacaa 391

                               
Query: 357 actgctctttagctatgaca 376
           ||||||||||||||||||||
Sbjct: 390 actgctctttagctatgaca 371


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)