Query= MSMg01no532_b04.b1 MSMg01no532_b04.b1 CHROMAT_FILE:
MSMg01no532_b04.b1 PHD_FILE: MSMg01no532_b04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:54 2005
(704 letters)
>mm_chr3_112658839_112659942
Length = 1104
Score = 685 bits (354), Expect = 0.0
Identities = 357/358 (99%)
Strand = Plus / Minus
Query: 347 attctctgacttgtagattctttacagtctctatcccttgatgtttcctgagctttggga 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1104 attctctgacttgtagattctttacagtctctatcccttgatgtttcctgagctttggga 1045
Query: 407 tggcgggctataaagatgttgactttaatggtgagtattaaataaacattctcagcactt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 tggcgggctataaagatgttgactttaatggtgagtattaaataaacattctcagcactt 985
Query: 467 ggaccagttgagacattgcattaaatgctacccacaggggaaaaaaatcttttcctatga 526
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 984 ggaccagttgagacattgcattaaatgctacccacagggggaaaaaatcttttcctatga 925
Query: 527 aggccatgatcaacactaatatttagagaaaattgctggcacttctgcaatgcttaatca 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 aggccatgatcaacactaatatttagagaaaattgctggcacttctgcaatgcttaatca 865
Query: 587 tgaggttctcaagttcctctaattctagtaggctctaccttttgatgaggtacagaggaa 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 tgaggttctcaagttcctctaattctagtaggctctaccttttgatgaggtacagaggaa 805
Query: 647 taagtaggaaacgctggtgtatgtgggtttgtgttcactgagattctggcaacttctg 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 taagtaggaaacgctggtgtatgtgggtttgtgttcactgagattctggcaacttctg 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1104
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1094
Effective search space: 759236
Effective search space used: 759236
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no532_b04.g1 MSMg01no532_b04.g1 CHROMAT_FILE:
MSMg01no532_b04.g1 PHD_FILE: MSMg01no532_b04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:54 2005
(585 letters)
>mm_chr3_112623727_112624711
Length = 985
Score = 1073 bits (555), Expect = 0.0
Identities = 576/585 (98%), Gaps = 4/585 (0%)
Strand = Plus / Plus
Query: 1 catatttttatatctaaatcaatttaactccttcttcataagtatgaattttttaattga 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 catatttttatatctaaatcaatttaactccttgttcataagtatgaattttttaattga 260
Query: 61 ataggcaagctaatctgtgcaaatatacctccaatcattacttttagtgaggattaatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataggcaagctaatctgtgcaaatatacctccaatcattacttttagtgaggattaatta 320
Query: 121 atctgttacctcctttgaatccattttctttgtgcttacattgacagatattaatataac 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctgttacatcctttgaatccattttctttgtgcttacattgacagatattaatataac 380
Query: 181 tacttcagcttattttcaggtttcatttttaaaatttcattttctgtcttttcacctatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacttcagcttattttcaggtttcatttttaaaatttcattttctgtcttttcacctatt 440
Query: 241 gtctatgctagtggagtgtgtttattaaaaacaacaagccagatgtttttattttatgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtctatgctagtggagtgtgtttattaaaaacaacaagccagatgtttttattttatgat 500
Query: 301 cacctaaataaatctacatattttttggagagttatgactacttacacttactattatta 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 cacctaaataaatctacatattttttggagagttacgactacttacacttactattatta 560
Query: 361 ctgaaaattgtataataattcctataattttgttttattttcttgtagataatttcaatg 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgaaaattgtataataattcctataattttgttttattttcttgtagataatttcaata 620
Query: 421 ttgtttgctcctttctttcttatctttacccatgaaagtttcttggcttattaaacattt 480
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgtttgctcctttctt----atctttacccatgaaagtttcttggcttattaaacattt 676
Query: 481 attatcaattttctcaatgataattttaattattctgttgatattcattttacttatggt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 677 attatcaattttctcaatgataattttaattattctgttgatattcattttacttctggt 736
Query: 541 ctagtgacctttattttttatcttttattcataaaatttccttag 585
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ctagtgacctttattttttatcttttattcataaaatttccttag 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
