BAC Information

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BAC

Clone NameMSMg01-532C06
Chromosome3 (Build37)
Map Location 124,088,129 - 124,088,427
singlet/doubletsinglet
Overlap geneLOC100043740
Upstream geneG430022H21Rik, Prss12, EG668804, Ndst3, LOC100043333, EG668809, Tram1l1
Downstream gene1700006A11Rik, 1700003H04Rik, LOC668817, LOC668820
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532C06.T7 (MSMg01no532_c06.b1)MSMg01-532C06.TJ (MSMg01no532_c06.g1)
ACCAG600371AG600372
length7501,355
length of high quality
(start - end)
620 (51 - 670)---
definitionCHROMAT_FILE: MSMg01no532_c06.b1 PHD_FILE: MSMg01no532_c06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:59 2005CHROMAT_FILE: MSMg01no532_c06.g1 PHD_FILE: MSMg01no532_c06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGAGCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGAT
CCGCGGAATTCCTTCAAGTTTCTCTCCATTTAGTTTGATGTTGGCTACTG
GTTTGCTGTATATTGCTTTTATTATGTTTAGATATGGACCTTGAATTCTG
GATTTCTCTAATACTTCTAACAGAAAGGGTTGTTGTATTTTGTCAAAGAC
TTTTATAATGAGATAATTTTGTGGGTTTTTTCTTTTCTTTTTTTTTCTTT
AAGTTTTAACTATATACTAAAAGAGTGTTCCTCTTTTAAGAAACAAAAAT
GTAATGCCATTTATAATCTTAAGACACTTTAAAATTACTTTTATATAGTA
GTAGCAATAATTTACATTCATAAAAAGAACCAAAATATTTCAAATCATAT
AGCTAAACCAAAGAAATCTATGACAATTTATCATATACATAACTGTTGAG
AACTATTTCAGAAGGCCAAGGAGTTTGTGCAATGAATTATATAAGTAACT
TTTAAAAATCGTCATTTGTTTATGAAGCAAGGGCAGGTTTTTAAACAGAG
GTGGTGTTATTCCGTCAAGTGCTTACATTCATTCTCAAAAATATCACGAG
GAAAACCTTTACCAAAAGTAAGCTACTTTTACCCTAGCAATCTCTATAAG
ATCCCCAATTGCTTTCTTCCACAAGAAACACTGTGATGCTGAAAAGGCCC
CAGCAGTGTCCTTTATGACTTTAATTCAAAACCTTTTGTTCTTAGAACTA

GATATGACCATGTATGGAATGTAGAGATTTTGGGGGAAGAAAAATANAGA
GGGATACGGGTAGGCTAGANNGGNNNNNNNGNNNNNNNAANGTGTGGCCC
AGAAAAAAAGAGGGGGGNNGNNNNNNGNNNGGNGGGGGAGAGTTTGGGTG
AGGATATATAGAAAGGGTAAGGTAGAGTGTTTAGGACAGAGAATGGAGAA
GGGGGTATGGATGTAGAATTGATTGTAAGTTAAGATAGGTGTGTAGTTGT
GTTGTGGTGGAGGGTGGGGGGGAGTTATGTTTATATGTAGATATTATTGA
AAGGTGTTAAAGTGAAGATAAGAGAGNATAGATAGGAATATTTGAAGGAG
AAGAAGATAGAGGAGAAATAGAGTAGGTTGATGATATGTTGAGTAATTAA
GTAATATAGATAAATAAGAGAGAAGGGAGAGAGTATAGTATATATATATT
AGAGTGTGGGAGAAGATAGTAAAATGTTATAGTATTATGAAGTTAGAGAG
AAAATAGAAGTAGTAGTGGTAAAGGGAAGGGAAGAGTGTTTTGTTTTGTT
GTTACGAGGAGTAATANGAAGGGAGGTTAGGTATTAAATCGTGTTGTAAG
ATGGATGAGAGATGTTTAATTATAGAGTTAATGAAAGGTTGATTAGTATA
TAAGGAGCATATAGAGAGTAGAATATATAAAGATATGGCTGACAATATGT
TTGGTTGAGATATGAGAAGTATTATGAAAAGTATAATGTAAATGTATATA
GTGGTAAATAACACCAAAATAATATTGTATGTTAATTAGTATGATGATAT
ACGAATAGATAAGAATTATATAATCAAATTCGTAAGTATTATTTATTAAA
TATATATAACTAATCGACTTTGATGGATTAGCGTGGATTATTTGGTGATT
AAGTAAGATGTGTTGGAGTGAATGACTGAAAGTTAATAATAGTATGATGA
AAGGTAGTGGGAGAAACGAGAGNATATGTAGAGAGAATGTATGGTTATAG
AAGAATAAATGTGGAAGAGAATAAAGTGTATTATATATAGACTGTAGATT
TGTAGAAGAGTAACATAGAGTATAATAGTGCATATATTATATGTTACTTG
GCAAAAAGTAATAGATGCATATATAAGGTGATGTCAATGAATGATACATG
AACATAGATTGTGGTTAGCGTGGGTGTGGAATGATAGTTGTGTGTATNGT
GTGGTAGATAAGCGAAAGAACGACAATGTATAATACGCAGGATGTAATTG
ATGCAGCTGACCTGATTATGTCGAATAGATGTCTGTAGTTATAAGATGAT
ATATATATATCGGGTACANGACGAGCATAATATTAATAGATGAGTGAACA
CTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_c06.b1 MSMg01no532_c06.b1 CHROMAT_FILE:
MSMg01no532_c06.b1 PHD_FILE: MSMg01no532_c06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:59 2005
         (620 letters)



>mm_chr3_124087443_124088462
          Length = 1020

 Score =  383 bits (198), Expect = e-110
 Identities = 299/396 (75%), Gaps = 97/396 (24%)
 Strand = Plus / Minus

                                                                       
Query: 225 gtgttcctcttttaagaaacaaaaatgtaatgccatttataatcttaagacactttaaaa 284
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 985 gtgttcctcttttaagaaac-aaaatgtaatgccatttataatcttaagacactttaaaa 927

                                                                       
Query: 285 ttacttttatatagtagtagcaataatttacattcataaaaagaaccaaaatatttcaaa 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 ttacttttatatagtagtagcaataatttacattcataaaaagaaccaaaatatttcaaa 867

                                                                       
Query: 345 tcatatagctaaaccaaagaaatctatgacaatttatcatatacataactgttgagaact 404
           ||||||||||||||||||||||||||||||||||||||||||||||              
Sbjct: 866 tcatatagctaaaccaaagaaatctatgacaatttatcatatacat-------------- 821

                                                                       
Query: 405 atttcagaaggccaaggagtttgtgcaatgaattatataagtaacttttaaaaatcgtca 464
                                                                       
Sbjct: 821 ------------------------------------------------------------ 821

                                                                       
Query: 465 tttgtttatgaagcaagggcaggtttttaaacagaggtggtgttattccgtcaagtgctt 524
                                 ||||||||||||||||||||||||||||||||||||||
Sbjct: 820 ----------------------gtttttaaacagaggtggtgttattccgtcaagtgctt 783

                                                                       
Query: 525 acattcattctcaaaaatatcacgaggaaaacctttaccaaaagtaagctacttttaccc 584
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 acattcattctcaaaaatatcacgaggaaaacctttaccaaaagtaagctacttttaccc 723

                                               
Query: 585 tagcaatctctataagatccccaattgctttcttcc 620
           ||||||||||||||||||||||||||||||||||||
Sbjct: 722 tagcaatctctataagatccccaattgctttcttcc 687


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)