BAC Information

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BAC

Clone NameMSMg01-532D02
Chromosome3 (Build37)
Map Location 102,573,840 - 102,736,731
singlet/doubletdoublet
Overlap geneTspan2, Tshb, Sycp1, LOC668425, LOC100043517
Upstream geneBC037703, Slc22a15, Nhlh2, LOC100043047, Casq2, Vangl1, EG433633, Ngfb
Downstream geneNr1h5, 5730470L24Rik, Csde1, Nras, Ampd1, Dennd2c, Bcas2, Trim33, Syt6, Atg4a-ps, LOC100043538, Olfml3, Hipk1, Dclre1b, Ap4b1, Gm566, Ptpn22, LOC668452, Rsbn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532D02.T7 (MSMg01no532_d02.b1)MSMg01-532D02.TJ (MSMg01no532_d02.g1)
ACCAG600411AG600412
length760751
length of high quality
(start - end)		705 (51 - 755)655 (79 - 733)
definitionCHROMAT_FILE: MSMg01no532_d02.b1 PHD_FILE: MSMg01no532_d02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:03 2005CHROMAT_FILE: MSMg01no532_d02.g1 PHD_FILE: MSMg01no532_d02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,736,031 - 102,736,731)(102,573,840 - 102,574,490)
sequence
NNAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGAGCCAATGAGCAGACTGTATTCAAAGCTGTATAAAGAG
GCTGAAAAGATAAAAAAGTGGAAAGTGAGCATAGAATCTGAACTGAAGCA
GAAAGAAAATAAGTTGCAAGAAAACAGAAAGATAATTGAAGCCCAGCGAA
AAGCCATTCAGGAACTTCAGGTATAATGGTGTTTTGGATTATAAATATGG
CAAATAAATACTATTTGAATAAAAAATAAAAGAAAAAAGATAAAAATATG
GCAATAAATATTAGCACAATACTGTTGGAAATAGAATTCAAATTAAATTG
CATTCATGTGGCAGATATTTTTGAGAACAAGGCTTTTTGAAATTTCACTA
ATAAAAGTTACAGGTCAGATTTAGGAATGAATACAGGACAAGTTCCACGA
AGATGATTAAGGAAATAATTAGATAATGGCAAATTTAGTCACATTCATTA
AAAAAAGAGTTTAAAATTTTATTAAGTCCTATTATTGATGTTTAATTTGA
TATGATATATATCAGAATGTATTTATGAAACTGTTTAGTTATAGCATAGA
ATGAGAAAAAGTCAAAGTACAAGCAGCTAATACACTTCAATATTATTAGA
AATAATATTCTCTAAATAGTATTGAATGATTTTACTGGTCATTCAGCACA
TTTTAAGCTGGTGAAAGTGAAAGGTTCGTCCCTCCCTTTTTATATTATTT
AATGTATGAG

NCCCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATAGATTAAGAACATAGTT
TTATTCTTTAAAATAAATAAATCGCCCCATAACTCAGATATTATGTTATG
AGTACCCTGTCTAAACCAATATAAACACCTTCTTCAATATGTATGCACAC
AACAAAGGCAAGTTAATGGATCAAAAGTACTTTCGTGCATACAGCTGCAG
CACAACTATATTCTTTCTCAGCGAACCCCTGTGGGGATTAATAGATGCTC
AGGTTCTTTGGGAGCCTGAGTGATTGATTTTAAGTGGGGAAACCCAGGCA
CTGCTCGGCCTTTTGGCAGCAAGTGGGAAACCCCACAGCAGGGTCGAAAT
TGATGTATTTGTCATAATGGAACAGCGTATAAAGGAGTCTTAGGATTATA
TTGACCACATAAAAGTGAAGGCATGAGGAATTCTGGAAACCGTCAGGCTA
GCTTCTATGTCCGCTAAGAACCTAAGACTTTGGTATGTGCTAGAACAAAG
TGCCATGCTTCAGGAAACTTTTACCAAGTGTTTTGCTGAGGACACACAAC
TGCTGGGATGTCTCACCCACAGAGCGCCACCTCTCTCTTTTTCAGGTATT
CTTGCTACTGCTACTAGCTTTGGAGAAAAAAACTGAGGGAGTTAAAAATA
TAACTGTGTATGACTACTTTACCTATGTACGCAAAAGAGTATTTAAAAAA
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_d02.b1 MSMg01no532_d02.b1 CHROMAT_FILE:
MSMg01no532_d02.b1 PHD_FILE: MSMg01no532_d02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:03 2005
         (705 letters)



>mm_chr3_102735827_102736931
          Length = 1105

 Score = 1348 bits (697), Expect = 0.0
 Identities = 700/701 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagagccaatgagcagactgtattcaaagctgtataaagaggctgaaaagataaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 gaattcagagccaatgagcagactgtattcaaagctgtataaagaggctgaaaagataaa 846

                                                                       
Query: 65  aaagtggaaagtgagcatagaatctgaactgaagcagaaagaaaataagttgcaagaaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 aaagtggaaagtgagcatagaatctgaactgaagcagaaagaaaataagttgcaagaaaa 786

                                                                       
Query: 125 cagaaagataattgaagcccagcgaaaagccattcaggaacttcaggtataatggtgttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 cagaaagataattgaagcccagcgaaaagccattcaggaacttcaggtataatggtgttt 726

                                                                       
Query: 185 tggattataaatatggcaaataaatactatttgaataaaaaataaaagaaaaaagataaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 tggattataaatatggcaaataaatactatttgaataaaaaataaaagaaaaaagataaa 666

                                                                       
Query: 245 aatatggcaataaatattagcacaatactgttggaaatagaattcaaattaaattgcatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 aatatggcaataaatattagcacaatactgttggaaatagaattcaaattaaattgcatt 606

                                                                       
Query: 305 catgtggcagatatttttgagaacaaggctttttgaaatttcactaataaaagttacagg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 catgtggcagatatttttgagaacaaggctttttgaaatttcactaataaaagttacagg 546

                                                                       
Query: 365 tcagatttaggaatgaatacaggacaagttccacgaagatgattaaggaaataattagat 424
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 545 tcagatttaggaatgaatacaggacaagttccactaagatgattaaggaaataattagat 486

                                                                       
Query: 425 aatggcaaatttagtcacattcattaaaaaaagagtttaaaattttattaagtcctatta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aatggcaaatttagtcacattcattaaaaaaagagtttaaaattttattaagtcctatta 426

                                                                       
Query: 485 ttgatgtttaatttgatatgatatatatcagaatgtatttatgaaactgtttagttatag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ttgatgtttaatttgatatgatatatatcagaatgtatttatgaaactgtttagttatag 366

                                                                       
Query: 545 catagaatgagaaaaagtcaaagtacaagcagctaatacacttcaatattattagaaata 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 catagaatgagaaaaagtcaaagtacaagcagctaatacacttcaatattattagaaata 306

                                                                       
Query: 605 atattctctaaatagtattgaatgattttactggtcattcagcacattttaagctggtga 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 atattctctaaatagtattgaatgattttactggtcattcagcacattttaagctggtga 246

                                                    
Query: 665 aagtgaaaggttcgtccctccctttttatattatttaatgt 705
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aagtgaaaggttcgtccctccctttttatattatttaatgt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1105
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1095
Effective search space:   761025
Effective search space used:   761025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no532_d02.g1 MSMg01no532_d02.g1 CHROMAT_FILE:
MSMg01no532_d02.g1 PHD_FILE: MSMg01no532_d02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:03 2005
         (655 letters)



>mm_chr3_102573640_102574694
          Length = 1055

 Score = 1228 bits (635), Expect = 0.0
 Identities = 647/651 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttatagattaagaacatagttttattctttaaaataaataaatcgccccataactcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttatagattaagaacatagttttattctttaaaataaataaatcgccccataactcaga 260

                                                                       
Query: 61  tattatgttatgagtaccctgtctaaaccaatataaacaccttcttcaatatgtatgcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattatgttatgagtaccctgtctaaaccaatataaacaccttcttcaatatgtatgcac 320

                                                                       
Query: 121 acaacaaaggcaagttaatggatcaaaagtactttcgtgcatacagctgcagcacaacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaacaaaggcaagttaatggatcaaaagtactttcgtgcatacagctgcagcacaacta 380

                                                                       
Query: 181 tattctttctcagcgaacccctgtggggattaatagatgctcaggttctttgggagcctg 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 tattctttctcagcgaacccctgtggggatgaatagatgctcaggttctttgggagcctg 440

                                                                       
Query: 241 agtgattgattttaagtggggaaacccaggcactgctcggccttttggcagcaagtggga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtgattgattttaagtggggaaacccaggcactgctcggccttttggcagcaagtggga 500

                                                                       
Query: 301 aaccccacagcagggtcgaaattgatgtatttgtcataatggaacagcgtataaaggagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaccccacagcagggtcgaaattgatgtatttgtcataatggaacagcgtataaaggagt 560

                                                                       
Query: 361 cttaggattatattgaccacataaaagtgaaggcatgaggaattctggaaaccgtcaggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttaggattatattgaccacataaaagtgaaggcatgaggaattctggaaaccgtcaggc 620

                                                                       
Query: 421 tagcttctatgtccgctaagaacctaagactttggtatgtgctagaacaaagtgccatgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagcttctatgtccgctaagaacctaagactttggtatgtgctagaacaaagtgccatgc 680

                                                                       
Query: 481 ttcaggaaacttttaccaagtgttttgctgaggacacacaactgctgggatgtctcaccc 540
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 681 ttcaggaaacttttaccaagtgttttgctgaggacacacaactcctgggatgtctcaccc 740

                                                                       
Query: 541 acagagcgccacctctctctttttcaggtattcttgctactgctactagctttggagaaa 600
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 741 acagagcgccacctctctctttttcagatattcttgctactgctactagctttggagaaa 800

                                                              
Query: 601 aaaactgagggagttaaaaatataactgtgtatgactactttacctatgta 651
           ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 801 aaaactgagggagttaaaagtataactgtgtatgactactttacctatgta 851


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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