Query= MSMg01no532_d16.b1 MSMg01no532_d16.b1 CHROMAT_FILE:
MSMg01no532_d16.b1 PHD_FILE: MSMg01no532_d16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:06 2005
(668 letters)
>mm_chr3_29068479_29069551
Length = 1073
Score = 1197 bits (619), Expect = 0.0
Identities = 655/669 (97%), Gaps = 5/669 (0%)
Strand = Plus / Minus
Query: 5 gaattcacatttttttctgaaaagcaaacagtatgtaaaataa--tcacaacatcatagg 62
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 873 gaattcacattttaacctgaaaagcaaacagtatgtaaaataatgtcacaacatcatagg 814
Query: 63 aatttcacaaaatacttcaattaatttcaaccggtgataatagcaagtgtttggtatatg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 aatttcacaaaatacttcaattaatttcaaccggtgataatagcaagtgtttggtatatg 754
Query: 123 tgtctgtggggaatgagctctcaaggtat---tggtagtggggaatgacacatattgctc 179
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 753 tgtctgtggggaatgagctctcaaggtattggtggtagtggggaatgacacatattgctc 694
Query: 180 ctgtggccaggacagagaggtattcctatggtgtaagcctggagacacagacaggtgtct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 ctgtggccaggacagagaggtattcctatggtgtaagcctggagacacagacaggtgtct 634
Query: 240 gtgaatgattatcaagcagggacatcagactactcagtccagcaagcacaggaaatgaaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gtgaatgattatcaagcagggacatcagactactcagtccagcaagcacaggaaatgaaa 574
Query: 300 atgtcattttcacactggcaccctagaagacataaggagaaagaggcagctcttctcttg 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 573 atgtcattttcacactggcaccctagaagacataaggagaaagaggcagctcttctctag 514
Query: 360 gaaacaactgcatcaaaggcaaatgtatcctaaggagattagataagcagatttgcatcc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gaaacaactgcatcaaaggcaaatgtatcctaaggagattagataagcagatttgcatcc 454
Query: 420 caccagtttgattctataataagccaatgcgaaaagagaactttttttttttctcaaaca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 caccagtttgattctataataagccaatgcgaaaagagaactttttttttttctcaaaca 394
Query: 480 gccatcacaatcgcatctgagtcctgcagtcacccatggaggaaaggagaagcagcgcag 539
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 393 gccatcacaatcgcatctgagttctgcagtcacccatggaagaaaggagaagcagcgcag 334
Query: 540 tccagactgcaccctcatctgctaaccaacagcttccatacaatcagagatgggatcagg 599
|||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||
Sbjct: 333 tccagactgcaccctcatctgctaaccagcagcttgcatacaatcagagatggaatcagg 274
Query: 600 gaaggcctgggactctgggcgacccaatagcacatagatgtgcagtccatacagaggaaa 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gaaggcctgggactctgggcgacccaatagcacatagatgtgcagtccatacagaggaaa 214
Query: 660 gatcatcca 668
|||||||||
Sbjct: 213 gatcatcca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1073
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1063
Effective search space: 699454
Effective search space used: 699454
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_d16.g1 MSMg01no532_d16.g1 CHROMAT_FILE:
MSMg01no532_d16.g1 PHD_FILE: MSMg01no532_d16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:06 2005
(655 letters)
>mm_chr3_28926238_28927292
Length = 1055
Score = 1266 bits (655), Expect = 0.0
Identities = 655/655 (100%)
Strand = Plus / Plus
Query: 1 tagatggtgggagtttggagatggtatgtggcttgggataaagaacaatgcatagcaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagatggtgggagtttggagatggtatgtggcttgggataaagaacaatgcatagcaaag 260
Query: 61 aaaataattattttagggagaaacttttctttaaatatgaatccaggaaaaacttgagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaataattattttagggagaaacttttctttaaatatgaatccaggaaaaacttgagct 320
Query: 121 gagaaccaaactttatgtactctgtatgagtgaattaggtttttttttaagttttgtttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagaaccaaactttatgtactctgtatgagtgaattaggtttttttttaagttttgtttt 380
Query: 181 atatataatttttagtttcttgtcacataaatgggctgatactttattctgccacagagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatataatttttagtttcttgtcacataaatgggctgatactttattctgccacagagg 440
Query: 241 actcttttggcacttacatggctcctatgtgcaaggtatcacgtttattatttggtcact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actcttttggcacttacatggctcctatgtgcaaggtatcacgtttattatttggtcact 500
Query: 301 gctcctcagatgatgctcttggacagtgaagaagatttgactaaggagctaggccctggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctcctcagatgatgctcttggacagtgaagaagatttgactaaggagctaggccctggg 560
Query: 361 ctggccaagtgcatgggaccatcacagacagacacagtaggcagctggcaagtggcctct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctggccaagtgcatgggaccatcacagacagacacagtaggcagctggcaagtggcctct 620
Query: 421 tgcaaccacaggtaggtccatcttctcttagccactgacacatgtctgctcatgagcttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcaaccacaggtaggtccatcttctcttagccactgacacatgtctgctcatgagcttt 680
Query: 481 cgttgtgtttgccacatagcacagtaattgccattaaaaatagtcactgataatgaaaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cgttgtgtttgccacatagcacagtaattgccattaaaaatagtcactgataatgaaaac 740
Query: 541 tattcacaataccatgcttattttaaaactctgatttgaacatgttagttatcactgaca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tattcacaataccatgcttattttaaaactctgatttgaacatgttagttatcactgaca 800
Query: 601 ataacttttcgattgtgttaaaacgtgattttgaaacaagtcattccaaccagta 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ataacttttcgattgtgttaaaacgtgattttgaaacaagtcattccaaccagta 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
