GGTGGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTGTTCTGTTCTGAGCCCCATTTTTTAATGGGGTTATTT
GATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAG
TCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTG
GTCTTTTTGTCTTATTGACAGTGTCTTTTGCCTTGCAGAAACTTTGGAGT
TTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGC
TGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCC
CCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCT
TTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCAAT
TTGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGA
AAATGCTGTCTTTCTTCCCCTGGATGGTTTTAGCTCCCTTGTCGAAGATC
AAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCA
TTGGTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAA
TTGCTCTTTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTT
CTTTTATCCTTGAGAAGACTTTTTGCTATCCTAGGTTTTTT

TATGTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATACTGACAGGCTTGGC
CAGCAAACACATCCACTGCTGAGCCTTTTTCTGAACAACAACAACAACAA
CAAAATTAAAAGCATTTTGAGTAAATGCTAGTTCTTCTCTAAATGAACAG
GGATCCAGAATATGAAACTAACCAGCTTCATATTATCACTGACATGATTT
CCTTTAACTTAAATTTCTAAGTAGAGGCAAGTTAATGTTAAAACCTAATT
CAATATTTTCTTACCTTAACTCTTGTTTTGTTTTGTTTTGTTTTGTTTTG
TTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTGTTTTGTTTT
ATAGAGACAGAGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCT
GTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCG
AGTGCTGGGATTAAAATCATATGCCACCACTGCCCGGCACCTTAACTCTC
AAATTAGACATTACACATAATATTTTGACTAAGAAAAAGAATAAATAGAA
TATATGTTTCCTCACAGATTCTTGCTTTTCTTCCCACCATTTTTCATAGT
GACCCAAATCAACCAGTTCCTCAAGACACAAAATTCATCCATACCAAACC
CAACCGCTTTGAAGAAGTAGCATGGACCAGATATTCCCAGAAAGAACAGC
TT

Query= MSMg01no532_f16.g1 MSMg01no532_f16.g1 CHROMAT_FILE:
MSMg01no532_f16.g1 PHD_FILE: MSMg01no532_f16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:15 2005
         (645 letters)



>mm_chr3_25333400_25334444
          Length = 1045

 Score =  888 bits (459), Expect = 0.0
 Identities = 507/549 (92%), Gaps = 41/549 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   atactgacaggcttggccagcaaacacatccactgctgagcctttttctgaacaacaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 atactgacaggcttggccagcaaacacatccactgctgagcctttttctgaacaacaaca 449

                                                                       
Query: 61  acaacaacaaaattaaaagcattttgagtaaatgctagttcttctctaaatgaacaggga 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 acaacaa-aaaattaaaagcattttgagtaaatgctagttcttctctaaatgaacaggga 390

                                                                       
Query: 121 tccagaatatgaaactaaccagcttcatattatcactgacatgatttcctttaacttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tccagaatatgaaactaaccagcttcatattatcactgacatgatttcctttaacttaaa 330

                                                                       
Query: 181 tttctaagtagaggcaagttaatgttaaaacctaattcaatattttcttaccttaactct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 329 tttctaagtagaggcaagttaatgttaaaacctaattcaatattttcttaccttaactc- 271

                                                                       
Query: 241 tgttttgttttgttttgttttgttttgttttgttttgttttgttttgttttgttttgttt 300
                                                  |||||||||||||||||||||
Sbjct: 270 ---------------------------------------ttgttttgttttgttttgttt 250

                                                                       
Query: 301 tgtttttgttttgttttatagagacagagtttctctgtgtagccctggctgtcctggaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tgtttttgttttgttttatagagacagagtttctctgtgtagccctggctgtcctggaac 190

                                                                       
Query: 361 tcactctgtagaccaggctggccttgaactcagaaatccgcctgcctctgcctcccgagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tcactctgtagaccaggctggccttgaactcagaaatccgcctgcctctgcctcccgagt 130

                                                                       
Query: 421 gctgggattaaaatcatatgccaccactgcccggcaccttaactctcaaattagacatta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 gctgggattaaaatcatatgccaccactgcccggcaccttaactctcaaattagacatta 70

                                                                       
Query: 481 cacataatattttgactaagaaaaagaataaatagaatatatgtttcctcacagattctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  cacataatattttgactaagaaaaagaataaatagaatatatgtttcctcacagattctt 10

                    
Query: 541 gcttttctt 549
           |||| ||||
Sbjct: 9   gcttgtctt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)